I am struggling to make TPP 4.7 working in Windows 8.
I am follow the description of " Quick Start to data analysis
using the TPP"（
http://tools.proteomecenter.org/wiki/index.php?title=TPP_Tutorial）.Step1 -
step5 is Ok！ Mistakes is happen in step6 ---Validation of
Peptide-Spectrum assignments with PeptideProphet.
When i *Run XInteract.*The commends finished immediately,and showed
*Command FAILED
*RETURN CODE:256.
Next is the advice and the context of failed commends :
(I have set the environment variable to my computer,the outcme still
wrong.Plz help me ,thank you ! )
running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml"
"OR20080317_S_SILAC-LH_1-1_01.tandem.pep.xml"
"OR20080320_S_SILAC-LH_1-1_11.tandem.pep.xml" -L"7""
*<PRE> Environment variable WEBSERVER_ROOT does not exist.
For Windows users, you can set this environment variable
through the Advanced tab under System Properties when you
right-mouse-click on your My Computer icon.
Set this environment variable to your webserver's document
root directory such as c:\inetpub\wwwroot for IIS or
c:\website\htdocs or WebSite Pro.
Exiting.
command completed in 1.39643e+009 sec
running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml""
pipe "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" failed: No error
error, could not execute: C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"
command "c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -OA
OR20080317_S_SILAC-LH_1-1_01.tandem.pep.xml
OR20080320_S_SILAC-LH_1-1_11.tandem.pep.xml" failed: Operation not permitted*
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