Joe is correct.  Just generate a new params file (by typing "comet -p" on
the command-line, for example), and use it as a new template.  Using an old
params file with the new comet may throw an error.
--Luis



On Mon, Apr 7, 2014 at 2:50 PM, Joseph Slagel <
[email protected]> wrote:

> Shouldn't be a problem.  We're just bundling the comet binaries in TPP --
> so no modifications.  You may encounter a small change with the parameters
> but that's easily fixed.
>
> -Joe
>
>
>
> On Mon, Apr 7, 2014 at 2:48 PM, Brian Hampton <[email protected]>wrote:
>
>> Hello,
>>
>> A new version of Comet was released recently.  Is there any problem with
>> replacing the previous version of Comet in tpp/bin with the new binary?  I
>> am aware only of Tandem being modified for e.g. plug-able scoring so it
>> (the version packaged with the TPP) is different than the ones released via
>> the GPM.
>>
>> Thanks in advance,
>>
>> Brian
>>
>> Brian Hampton
>> Protein Analysis Lab
>> Center for Vascular and Inflammatory Diseases
>> University of Maryland School of Medicine
>> 655 West Baltimore Street BRB 7-018
>> Baltimore  MD  21201
>> V: 410-706-8207
>>
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>
>
>
> --
> Joe Slagel
> Institute for Systems Biology
> [email protected]
> (206) 732-1362
>
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