I can't tell without looking at the file but my best guess is one of the following:
A. The sqt could be malformed or corrupted, has this tool generated sqt that you could convert before or was this your first try? B. It cannot find the data file mzML or mzXML per the message If you share the file I could potentially identify the issue. -David On Mon, Apr 14, 2014 at 11:18 AM, Will Fondrie <[email protected]> wrote: > Hi everyone, > > I am trying to convert *.sqt files from my ProLuCID searches into > *.pep.XML using the Sqt2XML tool. > The command I am running is: > > > Sqt2XML cidtest.sqt > > Where "cidtest.sqt" is my example search result, and my sequest.params > file is in the same directory. However, I get the following output: > > params file here: sequest.params > attempting to read mzXML/mzML: Unknown file type. No file loaded. > Done. File created: cidtest.pep.xml > > When I check the *.pep.xml file that was created, it is not nearly as > large as it should be. Any idea's on what I'm doing wrong? > > Thank you, > Will > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
