Hello, try to replace \n\n with \n. it seems that the prolucid sqt has double returns that the sqt2XML program does not like.
toni On Monday, April 14, 2014 2:18:19 PM UTC-4, Will Fondrie wrote: > > Hi everyone, > > I am trying to convert *.sqt files from my ProLuCID searches into > *.pep.XML using the Sqt2XML tool. > The command I am running is: > > > Sqt2XML cidtest.sqt > > Where "cidtest.sqt" is my example search result, and my sequest.params > file is in the same directory. However, I get the following output: > > params file here: sequest.params > attempting to read mzXML/mzML: Unknown file type. No file loaded. > Done. File created: cidtest.pep.xml > > When I check the *.pep.xml file that was created, it is not nearly as > large as it should be. Any idea's on what I'm doing wrong? > > Thank you, > Will > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
