Here's a Google Drive link to the cidtest.sqt file that I'm working with. https://drive.google.com/file/d/0B0ATSXjfowrdV2ZDQXlTbEMwdVU/edit?usp=sharing
The file was too big to attach to this message. It was generated as the output from a ProLuCID search using a *.ms2 file. This was my first time trying to convert the *.sqt files from this tool (and in general). Thanks for the help and the quick reply! -Will On Monday, April 14, 2014 2:34:38 PM UTC-4, David Shteynberg wrote: > > I can't tell without looking at the file but my best guess is one of the > following: > > A. The sqt could be malformed or corrupted, has this tool generated sqt > that you could convert before or was this your first try? > > B. It cannot find the data file mzML or mzXML per the message > > If you share the file I could potentially identify the issue. > > -David > > > > > On Mon, Apr 14, 2014 at 11:18 AM, Will Fondrie <[email protected]<javascript:> > > wrote: > >> Hi everyone, >> >> I am trying to convert *.sqt files from my ProLuCID searches into >> *.pep.XML using the Sqt2XML tool. >> The command I am running is: >> >> > Sqt2XML cidtest.sqt >> >> Where "cidtest.sqt" is my example search result, and my sequest.params >> file is in the same directory. However, I get the following output: >> >> params file here: sequest.params >> attempting to read mzXML/mzML: Unknown file type. No file loaded. >> Done. File created: cidtest.pep.xml >> >> When I check the *.pep.xml file that was created, it is not nearly as >> large as it should be. Any idea's on what I'm doing wrong? >> >> Thank you, >> Will >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to >> [email protected]<javascript:> >> . >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
