If the same command worked on the commandline and not through Petunia then the problem is not with the parameters but maybe with the system environment. Can you tell us more about the system you are running this on? The paths looks like windows and yet you attached params file contains linux paths:
<note type="input" label="list path, taxonomy information"> /usr/local/tpp/data/parameters/taxonomy.xml</note> <note type="input" label="protein, taxon">protein_database</note> See if this works better: <note type="input" label="list path, taxonomy information"> C:\Inetpub\wwwroot\ISB\data\parameters\taxonomy.xml</note> <note type="input" label="protein, taxon">protein_database</note> -David On Fri, Apr 18, 2014 at 12:32 PM, Will Fondrie <[email protected]> wrote: > Hi everyone, > > I'm now having trouble getting an X!Tandem search working through the > Petunia GUI on my Windows machine. Whenever I try to start a search I > receive this error: > > *EXECUTING: run_in c:/Inetpub/wwwroot/ISB/data/Will; > c:\Inetpub\tpp-bin\tandem > c:/Inetpub/wwwroot/ISB/data/Will/test.tandem.params * > > command "c:\Inetpub\tpp-bin\tandem > c:/Inetpub/wwwroot/ISB/data/Will/test.tandem.params" failed: Unknown error > > *Command FAILED* > RETURN CODE:65280 > > However, I have no problems doing the same search, with the same > parameters file from the command line. Any suggestions about what may be > going on? > > I've attached that parameter file that I'm using as well. > > Thank you, > Will > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
