Dear Joe,
my first try was with the official libboost 1.54 packages of Ubuntu
14.04. Since this make gave the mentioned thread.a missing problem, I
built the 1.55 version; however, during compilation of TPP the error
returned.
Might it be an idea to build the libboost 1.54 and to try again?
Best, Robert
On Mo 23 Jun 2014 19:57:26 CDT, Joseph Slagel wrote:
Hi Robert,
It sounds like you built your own version of boost as we're still on
1.54.0? If so getting the right packages built and linked with the
TPP might be a bit challenging. Any reason for not going with the
stock boost that built in TPP?
-Joe
On Mon, Jun 23, 2014 at 4:16 PM, Robert <[email protected]
<mailto:[email protected]>> wrote:
Hi, same here. I compiled and installed the boost libraries 1.55.0
on Ubuntu 14.04.
The compilation of TPP 4.7.1 stops with
[ERROR] Boost libary build failed (missing
/home/rob/Downloads/tpp_4.7.1/src/../build/Ubuntu-x86_64/boost/lib/libboost_thread.a),
please report the results of manually running the following commands:
Any ideas (downgrade to 12.04 is not an option for me)?
Best Regards,
obert
Am Montag, 12. Mai 2014 10:42:39 UTC-5 schrieb Will Fondrie:
Hello,
I am trying to install TPP on a machine running 64bit Ubuntu
14.04 LTS. I keep running into the error below when I try
compiling using the make command.
I've tried using gcc-4.8 and gcc-4.4 as well as boost 1.54 and
1.55 with no luck.
Thank you for the help.
-Will
building boost libraries...
Performing configuration checks
- zlib : yes (cached)
- has_icu builds : yes (cached)
Component configuration:
- atomic : not building
- chrono : not building
- context : not building
- coroutine : not building
- date_time : building
- exception : not building
- filesystem : building
- graph : not building
- graph_parallel : not building
- iostreams : building
- locale : not building
- log : not building
- math : not building
- mpi : not building
- program_options : building
- python : not building
- random : not building
- regex : building
- serialization : building
- signals : not building
- system : not building
- test : not building
- thread : building
- timer : not building
- wave : not building
In file included from ./boost/atomic.hpp:12,
from ./boost/thread/pthread/once___atomic.hpp:20,
from ./boost/thread/once.hpp:20,
from
libs/thread/src/pthread/./__once_atomic.cpp:9,
from libs/thread/src/pthread/once.__cpp:8:
./boost/atomic/atomic.hpp:202: error: ‘uintptr_t’ was not
declared in this scope
./boost/atomic/atomic.hpp:202: error: template argument 1 is
invalid
./boost/atomic/atomic.hpp:202: error: invalid type in
declaration before ‘;’ token
In file included from ./boost/atomic.hpp:12,
from ./boost/thread/pthread/once___atomic.hpp:20,
from ./boost/thread/once.hpp:20,
from libs/thread/src/pthread/__thread.cpp:17:
./boost/atomic/atomic.hpp:202: error: ‘uintptr_t’ was not
declared in this scope
./boost/atomic/atomic.hpp:202: error: template argument 1 is
invalid
./boost/atomic/atomic.hpp:202: error: invalid type in
declaration before ‘;’ token
./boost/system/error_code.hpp:__222: warning:
‘boost::system::posix___category’ defined but not used
./boost/system/error_code.hpp:__223: warning:
‘boost::system::errno_ecat’ defined but not used
./boost/system/error_code.hpp:__224: warning:
‘boost::system::native_ecat’ defined but not used
...failed updating 2 targets...
Command exited with non-zero status 1
1.03user 0.09system 0:00.97elapsed 116%CPU (0avgtext+0avgdata
164912maxresident)k
0inputs+32outputs (0major+62861minor)pagefaults 0swaps
[ERROR] Boost libary build failed (missing
/usr/local/src/TPP-4.7.0/__trans_proteomic_pipeline/src/.__./build/Ubuntu-x86_64/boost/__lib/libboost_thread.a),
please report the results of manually running the following
commands:
cd
/usr/local/src/TPP-4.7.0/__trans_proteomic_pipeline/src/.__./extern/boost_1_54_0;
time
/usr/local/src/TPP-4.7.0/__trans_proteomic_pipeline/src/.__./extern/boost_1_54_0/tools/__build/v2/engine/bin.linuxx86___64/bjam
-q -d0
--stagedir=/usr/local/src/TPP-__4.7.0/trans_proteomic___pipeline/src/../build/Ubuntu-__x86_64/boost
--build-dir=/usr/local/src/__TPP-4.7.0/trans_proteomic___pipeline/src/../build/Ubuntu-__x86_64/boost/obj
--layout=system --build-type=minimal -j3 variant=release
link=static runtime-link=shared --with-filesystem
--with-date_time --with-iostreams --with-program_options
--with-regex --with-serialization --with-thread stage
/bin/sh: 1: exit: Illegal number: -1
make: *** [boost-build-libs] Error 2
Running the commands above results in:
Performing configuration checks
- zlib : yes (cached)
- has_icu builds : yes (cached)
Component configuration:
- atomic : not building
- chrono : not building
- context : not building
- coroutine : not building
- date_time : building
- exception : not building
- filesystem : building
- graph : not building
- graph_parallel : not building
- iostreams : building
- locale : not building
- log : not building
- math : not building
- mpi : not building
- program_options : building
- python : not building
- random : not building
- regex : building
- serialization : building
- signals : not building
- system : not building
- test : not building
- thread : building
- timer : not building
- wave : not building
In file included from ./boost/atomic.hpp:12,
from ./boost/thread/pthread/once___atomic.hpp:20,
from ./boost/thread/once.hpp:20,
from
libs/thread/src/pthread/./__once_atomic.cpp:9,
from libs/thread/src/pthread/once.__cpp:8:
./boost/atomic/atomic.hpp:202: error: ‘uintptr_t’ was not
declared in this scope
./boost/atomic/atomic.hpp:202: error: template argument 1 is
invalid
./boost/atomic/atomic.hpp:202: error: invalid type in
declaration before ‘;’ token
In file included from ./boost/atomic.hpp:12,
from ./boost/thread/pthread/once___atomic.hpp:20,
from ./boost/thread/once.hpp:20,
from libs/thread/src/pthread/__thread.cpp:17:
./boost/atomic/atomic.hpp:202: error: ‘uintptr_t’ was not
declared in this scope
./boost/atomic/atomic.hpp:202: error: template argument 1 is
invalid
./boost/atomic/atomic.hpp:202: error: invalid type in
declaration before ‘;’ token
./boost/system/error_code.hpp:__222: warning:
‘boost::system::posix___category’ defined but not used
./boost/system/error_code.hpp:__223: warning:
‘boost::system::errno_ecat’ defined but not used
./boost/system/error_code.hpp:__224: warning:
‘boost::system::native_ecat’ defined but not used
...failed updating 2 targets...
real 0m0.997s
user 0m1.062s
sys 0m0.099s
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Joe Slagel
Institute for Systems Biology
[email protected] <mailto:[email protected]>
(206) 732-1362
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