Hi there Thanks for the post. I am trying to install 4.8 on Ubuntu 14.04. In my case the boost is now compiling after I followed the workaround, but i am having issues with the hdf5. Any suggestion?
The /lib folder is available inside build/Ubuntu-x86_64/hdf5-1.8.6/tools/lib or /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/build/Ubuntu-x86_64/hdf5-1.8.6/hdf5/lib make[3]: *** [h5tools_utils.lo] Error 1 make[3]: Leaving directory `/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/build/Ubuntu-x86_64/hdf5-1.8.6/tools/lib' make[2]: *** [install-recursive] Error 1 make[2]: Leaving directory `/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/build/Ubuntu-x86_64/hdf5-1.8.6/tools' make[1]: *** [install-recursive] Error 1 make[1]: Leaving directory `/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/build/Ubuntu-x86_64/hdf5-1.8.6' make: *** [/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/hdf5-1.8.6/hdf5/lib/libhdf5_cpp.a] Error 2 Many Thanks Regards MD On Tuesday, June 24, 2014 at 9:16:37 AM UTC+10, Robert wrote: > > Hi, same here. I compiled and installed the boost libraries 1.55.0 on > Ubuntu 14.04. > The compilation of TPP 4.7.1 stops with > [ERROR] Boost libary build failed (missing > /home/rob/Downloads/tpp_4.7.1/src/../build/Ubuntu-x86_64/boost/lib/libboost_thread.a), > > please report the results of manually running the following commands: > > Any ideas (downgrade to 12.04 is not an option for me)? > > Best Regards, > > obert > > > > Am Montag, 12. Mai 2014 10:42:39 UTC-5 schrieb Will Fondrie: >> >> Hello, >> >> I am trying to install TPP on a machine running 64bit Ubuntu 14.04 LTS. I >> keep running into the error below when I try compiling using the make >> command. >> I've tried using gcc-4.8 and gcc-4.4 as well as boost 1.54 and 1.55 with >> no luck. >> >> Thank you for the help. >> >> -Will >> >> building boost libraries... >> Performing configuration checks >> >> - zlib : yes (cached) >> - has_icu builds : yes (cached) >> >> Component configuration: >> >> - atomic : not building >> - chrono : not building >> - context : not building >> - coroutine : not building >> - date_time : building >> - exception : not building >> - filesystem : building >> - graph : not building >> - graph_parallel : not building >> - iostreams : building >> - locale : not building >> - log : not building >> - math : not building >> - mpi : not building >> - program_options : building >> - python : not building >> - random : not building >> - regex : building >> - serialization : building >> - signals : not building >> - system : not building >> - test : not building >> - thread : building >> - timer : not building >> - wave : not building >> >> In file included from ./boost/atomic.hpp:12, >> from ./boost/thread/pthread/once_atomic.hpp:20, >> from ./boost/thread/once.hpp:20, >> from libs/thread/src/pthread/./once_atomic.cpp:9, >> from libs/thread/src/pthread/once.cpp:8: >> ./boost/atomic/atomic.hpp:202: error: ‘uintptr_t’ was not declared in >> this scope >> ./boost/atomic/atomic.hpp:202: error: template argument 1 is invalid >> ./boost/atomic/atomic.hpp:202: error: invalid type in declaration before >> ‘;’ token >> In file included from ./boost/atomic.hpp:12, >> from ./boost/thread/pthread/once_atomic.hpp:20, >> from ./boost/thread/once.hpp:20, >> from libs/thread/src/pthread/thread.cpp:17: >> ./boost/atomic/atomic.hpp:202: error: ‘uintptr_t’ was not declared in >> this scope >> ./boost/atomic/atomic.hpp:202: error: template argument 1 is invalid >> ./boost/atomic/atomic.hpp:202: error: invalid type in declaration before >> ‘;’ token >> ./boost/system/error_code.hpp:222: warning: >> ‘boost::system::posix_category’ defined but not used >> ./boost/system/error_code.hpp:223: warning: ‘boost::system::errno_ecat’ >> defined but not used >> ./boost/system/error_code.hpp:224: warning: ‘boost::system::native_ecat’ >> defined but not used >> ...failed updating 2 targets... >> Command exited with non-zero status 1 >> 1.03user 0.09system 0:00.97elapsed 116%CPU (0avgtext+0avgdata >> 164912maxresident)k >> 0inputs+32outputs (0major+62861minor)pagefaults 0swaps >> [ERROR] Boost libary build failed (missing >> /usr/local/src/TPP-4.7.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/boost/lib/libboost_thread.a), >> >> please report the results of manually running the following commands: >> cd >> /usr/local/src/TPP-4.7.0/trans_proteomic_pipeline/src/../extern/boost_1_54_0; >> >> time >> /usr/local/src/TPP-4.7.0/trans_proteomic_pipeline/src/../extern/boost_1_54_0/tools/build/v2/engine/bin.linuxx86_64/bjam >> >> -q -d0 >> --stagedir=/usr/local/src/TPP-4.7.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/boost >> >> --build-dir=/usr/local/src/TPP-4.7.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/boost/obj >> >> --layout=system --build-type=minimal -j3 variant=release link=static >> runtime-link=shared --with-filesystem --with-date_time --with-iostreams >> --with-program_options --with-regex --with-serialization --with-thread stage >> /bin/sh: 1: exit: Illegal number: -1 >> make: *** [boost-build-libs] Error 2 >> >> Running the commands above results in: >> >> >> Performing configuration checks >> >> - zlib : yes (cached) >> - has_icu builds : yes (cached) >> >> Component configuration: >> >> - atomic : not building >> - chrono : not building >> - context : not building >> - coroutine : not building >> - date_time : building >> - exception : not building >> - filesystem : building >> - graph : not building >> - graph_parallel : not building >> - iostreams : building >> - locale : not building >> - log : not building >> - math : not building >> - mpi : not building >> - program_options : building >> - python : not building >> - random : not building >> - regex : building >> - serialization : building >> - signals : not building >> - system : not building >> - test : not building >> - thread : building >> - timer : not building >> - wave : not building >> >> In file included from ./boost/atomic.hpp:12, >> from ./boost/thread/pthread/once_atomic.hpp:20, >> from ./boost/thread/once.hpp:20, >> from libs/thread/src/pthread/./once_atomic.cpp:9, >> from libs/thread/src/pthread/once.cpp:8: >> ./boost/atomic/atomic.hpp:202: error: ‘uintptr_t’ was not declared in >> this scope >> ./boost/atomic/atomic.hpp:202: error: template argument 1 is invalid >> ./boost/atomic/atomic.hpp:202: error: invalid type in declaration before >> ‘;’ token >> In file included from ./boost/atomic.hpp:12, >> from ./boost/thread/pthread/once_atomic.hpp:20, >> from ./boost/thread/once.hpp:20, >> from libs/thread/src/pthread/thread.cpp:17: >> ./boost/atomic/atomic.hpp:202: error: ‘uintptr_t’ was not declared in >> this scope >> ./boost/atomic/atomic.hpp:202: error: template argument 1 is invalid >> ./boost/atomic/atomic.hpp:202: error: invalid type in declaration before >> ‘;’ token >> ./boost/system/error_code.hpp:222: warning: >> ‘boost::system::posix_category’ defined but not used >> ./boost/system/error_code.hpp:223: warning: ‘boost::system::errno_ecat’ >> defined but not used >> ./boost/system/error_code.hpp:224: warning: ‘boost::system::native_ecat’ >> defined but not used >> ...failed updating 2 targets... >> >> real 0m0.997s >> user 0m1.062s >> sys 0m0.099s >> >> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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