Hello,

I would like to have the base peak intensity values (that are present in
the mzML file) reported in the pepxml or protxml files after running the
prophets.  Might there already be a parameter one could add when running
either peptide or protein prophet to have those values reported in the
result files?

Thanks in advance,

Brian



Brian Hampton
Protein Analysis Lab
Center for Vascular and Inflammatory Diseases
University of Maryland School of Medicine
655 West Baltimore Street BRB 7-018
Baltimore  MD  21201
V: 410-706-8207

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