Thanks Jason,
I decided to run xinteract without any arguments so it would list the
options. Turns out to get intensity values listed in the pepxml file the
option is -PREC. When I run xinteract without any arguments and pipe that
into grep searching for intensity I get the following:
root@bluewhale:/usr/local/tpp/bin# ./xinteract |grep intensity
-PREC record precursor intensity in pepXML
-i also export intensities and intensity based
ratio
The second line with the -i is listed as an option for Xpress. I didn't
see any options for intensity via -l.
Cheers,
Brian
On Thu, Jul 17, 2014 at 12:18 PM, Jason Winget <[email protected]> wrote:
> Hi Brian,
> You can get the precursor intensities in pepXML files by adding the -I
> flag to your InteractParser call
>
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