Brian, That "-PREC" command line option in "xinteract" will invoke the "-I" option in "InteractParser" to report the precursor intensity. "xinteract" is a wrapper that runs many tools, including "InteractParser" that Jason referred to. Hope this makes sense.
- Jimmy On Thu, Jul 17, 2014 at 3:19 PM, Brian Hampton <[email protected]> wrote: > Thanks Jason, > > I decided to run xinteract without any arguments so it would list the > options. Turns out to get intensity values listed in the pepxml file the > option is -PREC. When I run xinteract without any arguments and pipe that > into grep searching for intensity I get the following: > > root@bluewhale:/usr/local/tpp/bin# ./xinteract |grep intensity > -PREC record precursor intensity in pepXML > -i also export intensities and intensity > based ratio > > The second line with the -i is listed as an option for Xpress. I didn't > see any options for intensity via -l. > > > Cheers, > Brian > > > On Thu, Jul 17, 2014 at 12:18 PM, Jason Winget <[email protected]> wrote: > >> Hi Brian, >> You can get the precursor intensities in pepXML files by adding the -I >> flag to your InteractParser call >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
