Javier, Sounds like it might be a memory/file size issue. First off I'd check the last line of the file to see if it has the mzML end marker. If it isn't "</mzML>" then you know msconvert didnt' finish converting the original file into mzML. Also, how big is the original file that you are trying to convert? What is the size of your mzML file? And is your computer a 32-bit operating system?
-Joe On Wed, Nov 12, 2014 at 6:11 PM, Javier Sotillo Gallego <[email protected]> wrote: > Hi all, > > I'm trying to convert wiff files to mzml files and despite the command is > successful I encounter this error during the conversion: > > Error writing run 1 in "1.wiff": > bad allocation > > The converter saves a mzml file, but cannot open it with Pep3D to check > the quality of the data. > > Any ideas? > > Thanks guys!!!! > > Here's a screenshot > > > <https://lh3.googleusercontent.com/-NpC3xhJLxfw/VGQSp6ljXcI/AAAAAAAAAJY/_amca9pPW7Y/s1600/Screen%2BShot%2B2014-11-13%2Bat%2B11.57.19%2BAM%2B%282%29.png> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- Joe Slagel Institute for Systems Biology [email protected] -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
