I'm trying to use TPP for the first time, and I've got an error that some
others seem to have suffered (and solved). But from what I can see my
system already has the "solutions" implemented, so I don't know what to do:
The complete message, when I try to run PeptideProphet
c:\Inetpub\tpp-bin\xinteract (TPP v4.8.0 PHILAE, Build 201411201551-6764
(mingw-i686))
PPM mode in Accurate Mass Model ... running:
"C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml"
"Plasma_sample_reference_160min-1.tandem.pep.xml"
"Plasma_sample_reference_160min-2.tandem.pep.xml"
"Plasma_sample_reference_160min-3.tandem.pep.xml" -L"7"" <PRE> Environment
variable WEBSERVER_ROOT does not exist.
For Windows users, you can set this environment variable through the
Advanced tab under System Properties when you right-mouse-click on your My
Computer icon.
Set this environment variable to your webserver's document root directory
such as c:\inetpub\wwwroot for IIS or c:\website\htdocs or WebSite Pro.
Exiting.
command completed in 0 sec
running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml""
pipe "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" failed: No
error
error, could not execute: C:/Inetpub/tpp-bin/DatabaseParser
"interact.pep.xml"
The solutions I've found are to insert the ENV variables (Windows 8.1) in
the system and in the httpd.conf Apache configuration file. But this is
something that is already correct on my installation:
WEBSERVER_ROOT
c:\Inetpub\wwwroot
Path
C:\Inetpub\tpp-bin;C:\Perl64\site\bin;C:\Perl64\bin;C:\ProgramData\Oracle\
Java\javapath;C:\Program Files\Dell\DW WLAN Card;;C:\Program Files (x86)\NVIDIA
Corporation\PhysX\Common;C:\Program Files (x86)\Intel\iCLS Client\;C:\
Program Files\Intel\iCLS Client\;%SystemRoot%\system32;%SystemRoot%;%
SystemRoot%\System32\Wbem;%SYSTEMROOT%\System32\WindowsPowerShell\v1.0\;C:\
Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program
Files (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files
\Intel\Intel(R) Management Engine Components\IPT;C:\Program Files (x86)\
Intel\Intel(R) Management Engine Components\IPT;C:\Program Files\WIDCOMM\
Bluetooth Software\;C:\Program Files\WIDCOMM\Bluetooth Software\syswow64
And in the Apache conf
Alias /tpp-bin "C:/Inetpub/tpp-bin"
<Directory "C:/Inetpub/tpp-bin">
Options Indexes MultiViews ExecCGI
AllowOverride None
Order allow,deny
Allow from all
AddHandler cgi-script .cgi .pl
ScriptInterpreterSource Registry
PassEnv WEBSERVER_ROOT
PassEnv WEBSERVER_TMP
</Directory>
Alias /ISB "C:/Inetpub/wwwroot/ISB"
Alias /schema "C:/Inetpub/wwwroot/schema"
<Directory "C:/Inetpub/wwwroot">
Options MultiViews Includes
AllowOverride None
Order allow,deny
Allow from all
AddType text/html .shtml
AddHandler server-parsed .shtml
PassEnv WEBSERVER_ROOT
PassEnv WEBSERVER_TMP
</Directory>
So, what can I do?
Thanks,
-Gerard
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