Hi Val, I tried to edit the post but not possible before being posted. I did reset the computer (I'd say I had already done it, suppose not) and this did the trick. Thanks anyway, -Gerard
On Thursday, February 19, 2015 at 1:35:16 AM UTC+1, Val wrote: > > Hi Gerard, > > Try these and let me know if it helps... > > a) You have "WEBSERVER_ROOT as c:\Inetpub\wwwroot" under Environment > variable ? > - On command prompt do you see the value if you type "set WEBSERVER_ROOT" > - Go to url http://*<yourhost>*:*<yourport>*/tpp-bin/check_env.pl > Do you see WEBSERVER_ROOT = C:\Inetpub\wwwroot > > b) In Apache httpd.conf add the following SetEnv (below is my httpd.conf) > SetEnv WEBSERVER_ROOT C:/Inetpub/wwwroot > SetEnv WEBSERVER_URL http://<Host>:<Port> > Alias /tpp-bin "C:/Inetpub/tpp-bin" > .... > > NOTE : If you added the Environment variable under "System variables" not > "User variables" then you must re-start for the changes to take effect. > > My conf: > ------------- > # Add 5-hour timeout > Timeout 18000 > > AddType text/html .shtml > AddHandler server-parsed .shtml > > SetEnv WEBSERVER_ROOT C:/Inetpub/wwwroot > SetEnv WEBSERVER_URL http://localhost:81 > Alias /tpp-bin "C:/Inetpub/tpp-bin" > <Directory "C:/Inetpub/tpp-bin"> > Options Indexes MultiViews ExecCGI > AllowOverride None > Order allow,deny > Allow from all > > AddHandler cgi-script .cgi .pl > ScriptInterpreterSource Registry > > PassEnv WEBSERVER_ROOT > PassEnv WEBSERVER_TMP > </Directory> > > Alias /ISB "C:/Inetpub/wwwroot/ISB" > Alias /isb "C:/Inetpub/wwwroot/ISB" > <Directory "C:/Inetpub/wwwroot/ISB"> > Options Indexes MultiViews Includes ExecCGI > AllowOverride None > Order allow,deny > Allow from all > AddType text/html .shtml > AddHandler server-parsed .shtml > PassEnv WEBSERVER_ROOT > PassEnv WEBSERVER_TMP > </Directory> > ------------- > > On Wed, Feb 18, 2015 at 9:42 AM, Gerard Such <[email protected] > <javascript:>> wrote: > >> I'm trying to use TPP for the first time, and I've got an error that some >> others seem to have suffered (and solved). But from what I can see my >> system already has the "solutions" implemented, so I don't know what to do: >> >> The complete message, when I try to run PeptideProphet >> >> c:\Inetpub\tpp-bin\xinteract (TPP v4.8.0 PHILAE, Build 201411201551-6764 >> (mingw-i686)) >> PPM mode in Accurate Mass Model ... running: >> "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" >> "Plasma_sample_reference_160min-1.tandem.pep.xml" >> "Plasma_sample_reference_160min-2.tandem.pep.xml" >> "Plasma_sample_reference_160min-3.tandem.pep.xml" -L"7"" <PRE> Environment >> variable WEBSERVER_ROOT does not exist. >> >> For Windows users, you can set this environment variable through the >> Advanced tab under System Properties when you right-mouse-click on your My >> Computer icon. >> >> Set this environment variable to your webserver's document root directory >> such as c:\inetpub\wwwroot for IIS or c:\website\htdocs or WebSite Pro. >> >> Exiting. >> command completed in 0 sec >> running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" >> pipe "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" failed: No >> error >> error, could not execute: C:/Inetpub/tpp-bin/DatabaseParser >> "interact.pep.xml" >> >> The solutions I've found are to insert the ENV variables (Windows 8.1) in >> the system and in the httpd.conf Apache configuration file. But this is >> something that is already correct on my installation: >> >> WEBSERVER_ROOT >> c:\Inetpub\wwwroot >> >> Path >> C:\Inetpub\tpp-bin;C:\Perl64\site\bin;C:\Perl64\bin;C:\ProgramData\Oracle >> \Java\javapath;C:\Program Files\Dell\DW WLAN Card;;C:\Program Files (x86 >> )\NVIDIA Corporation\PhysX\Common;C:\Program Files (x86)\Intel\iCLS >> Client\;C:\Program Files\Intel\iCLS Client\;%SystemRoot%\system32;% >> SystemRoot%;%SystemRoot%\System32\Wbem;%SYSTEMROOT%\System32\ >> WindowsPowerShell\v1.0\;C:\Program Files\Intel\Intel(R) Management Engine >> Components\DAL;C:\Program Files (x86)\Intel\Intel(R) Management Engine >> Components\DAL;C:\Program Files\Intel\Intel(R) Management Engine >> Components\IPT;C:\Program Files (x86)\Intel\Intel(R) Management Engine >> Components\IPT;C:\Program Files\WIDCOMM\Bluetooth Software\;C:\Program >> Files\WIDCOMM\Bluetooth Software\syswow64 >> >> And in the Apache conf >> >> Alias /tpp-bin "C:/Inetpub/tpp-bin" >> <Directory "C:/Inetpub/tpp-bin"> >> Options Indexes MultiViews ExecCGI >> AllowOverride None >> Order allow,deny >> Allow from all >> >> AddHandler cgi-script .cgi .pl >> ScriptInterpreterSource Registry >> >> PassEnv WEBSERVER_ROOT >> PassEnv WEBSERVER_TMP >> </Directory> >> >> Alias /ISB "C:/Inetpub/wwwroot/ISB" >> >> Alias /schema "C:/Inetpub/wwwroot/schema" >> >> <Directory "C:/Inetpub/wwwroot"> >> Options MultiViews Includes >> AllowOverride None >> Order allow,deny >> Allow from all >> >> AddType text/html .shtml >> AddHandler server-parsed .shtml >> >> PassEnv WEBSERVER_ROOT >> PassEnv WEBSERVER_TMP >> </Directory> >> >> So, what can I do? >> >> Thanks, >> -Gerard >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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