Hello Filip, If you are on windows you can try to replace the PTMProphetParser.exe file in C:\Inetpub\tpp-bin with this copy which has better handling of mods and improved error reporting.
https://dl.dropboxusercontent.com/u/21286225/PTMProphetParser.exe -David On Tue, Apr 14, 2015 at 1:30 AM, Filip <[email protected]> wrote: > Dear TPP team, > > I'm trying to run PTM Prophet on phosphopeptides fractions which are > itraq-labeled and getting constantly this message: "WARNING: Unrecognized > mod on peptide". > In Ptm Prophet, I select: > STY, 79.966 > C 45.987721 (which is carbothiol) > M 15.994915 > Is this correct? > As I understood from the other topics these mods are not supported yet and > they are not incorporated in PTM Prophet. Could you please help me with > that? I would be extremely gratefull! > > best regards, > > Filip > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
