Hi Joe, I am trying to install 4.8 on linux and getting the following error. I also tried 4.71 , and both on ubuntu 12.04 and 14.04. . Can you please help?
tu-x86_64 ZLIB_INCL="" ZLIB_LIB=-lz STATIC_LIBSTDCPP= make[1]: Entering directory `/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/extern/gzstream' g++ -I. -O -c -o Ubuntu-x86_64gzstream.o gzstream.cpp ar cr /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/libgzstream.a Ubuntu-x86_64gzstream.o make[1]: Leaving directory `/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/extern/gzstream' uncompressing HDF5 library mkdir -p /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/hdf5-1.8.6 cd /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/hdf5-1.8.6; cd ..; tar zxf /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6.tar.gz; \ for P in /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6.gcc47patch /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6.mingwpatch; do \ echo "applying HDF5 patch $P"; \ patch -s -p0 < $P; \ done applying HDF5 patch /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6.gcc47patch /bin/sh: 4: patch: not found applying HDF5 patch /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6.mingwpatch /bin/sh: 4: patch: not found make: *** [/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/hdf5-1.8.6] Error 127 root@trans-proteomic-pipeline:/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src# Thank you Regards Mohammad On Saturday, November 22, 2014 at 9:07:05 AM UTC+11, [email protected] wrote: > > Announcing the official release of Trans-Proteomic Pipeline (TPP) 4.8.0 > "PHILAE" > > We are proud to offer a update to the Trans-Proteomic Pipeline (TPP) > software, release 4.8.0 (4.8 revision). The software is available for > Windows as well as Linux (and unofficially) through OSX source from all the > usual locations (please see the section below, "Getting the software"). > Most users are recommended to use the Windows installer, which installs and > configures the TPP and other required software (such as a web server). > For advanced users who need to customize the TPP, or for those who run on > Linux or OS X, you can download the source code. > > > == Release Notes == > > * Release notes on the most important new features, changes, and known > issues are available at: > > "http://tools.proteomecenter.org/wiki/index.php?title=TPP:4.8 > .0_Release_Notes" > > > == Getting the TPP Software == > > * Download the TPP version 4.8.0 native windows installer from the > Sashimi SourceForge project file release page: > > "http://sourceforge.net/ > <http://goog_2056063534>http://sourceforge.net/projects/sashimi/files/Trans-Proteomic > > Pipeline (TPP)" > > * Everyone is encouraged to read and contribute to our wiki, at > "http://tools.proteomecenter.org/wiki/"; > > * For guides to installing and using our software, please see our wiki: > "http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP"; > > * For downloading the source code, please go to the following link: > "http://sourceforge.net/projects/sashimi/files/"; and find the 4.8.0 > source code .zip package; > or, check out the code directly from svn: > "svn co svn://svn.code.sf.net/p/sashimi/code/tags/release_4-8-0" > > For building from source, please refer to the README and INSTALL files in > src/ > directory of TPP as well as the wiki. > > > == Acknowledgements == > > The TPP Team: Luis, David, Mike, and Joe, plus all other developers who > contributed to this release from the ISB. Thanks to developers and users > from the TPP's user community who also provide feedback and code > contributions. > > > -- > Joe Slagel > Institute for Systems Biology > [email protected] > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
