It appears as if you are missing the following file: /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6.gcc47patch
Can you look to see what *patch files you have in this directory? And did you download the source tar archive or did you check out the code from the sourceforge svn repository? -Joe On Thu, May 28, 2015 at 10:38 AM, MD <[email protected]> wrote: > Hi Joe, > > I am trying to install 4.8 on linux and getting the following error. I > also tried 4.71 , and both on ubuntu 12.04 and 14.04. . Can you please > help? > > tu-x86_64 ZLIB_INCL="" ZLIB_LIB=-lz STATIC_LIBSTDCPP= > > make[1]: Entering directory > `/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/extern/gzstream' > > g++ -I. -O -c -o Ubuntu-x86_64gzstream.o gzstream.cpp > > ar cr > /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/libgzstream.a > Ubuntu-x86_64gzstream.o > > make[1]: Leaving directory > `/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/extern/gzstream' > > uncompressing HDF5 library > > mkdir -p > /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/hdf5-1.8.6 > > cd > /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/hdf5-1.8.6; > cd ..; tar zxf > /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6.tar.gz; > \ > > for P in > /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6.gcc47patch > /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6.mingwpatch; > do \ > > echo "applying HDF5 patch $P"; \ > > patch -s -p0 < $P; \ > > done > > applying HDF5 patch > /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6.gcc47patch > > /bin/sh: 4: patch: not found > > applying HDF5 patch > /home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../extern/hdf5-1.8.6.mingwpatch > > /bin/sh: 4: patch: not found > > make: *** > [/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src/../build/Ubuntu-x86_64/hdf5-1.8.6] > Error 127 > > root@trans-proteomic-pipeline > :/home/ubuntu/software/TPP-4.8.0/trans_proteomic_pipeline/src# > > > > Thank you > > Regards > Mohammad > > On Saturday, November 22, 2014 at 9:07:05 AM UTC+11, > [email protected] wrote: >> >> Announcing the official release of Trans-Proteomic Pipeline (TPP) 4.8.0 >> "PHILAE" >> >> We are proud to offer a update to the Trans-Proteomic Pipeline (TPP) >> software, release 4.8.0 (4.8 revision). The software is available for >> Windows as well as Linux (and unofficially) through OSX source from all the >> usual locations (please see the section below, "Getting the software"). >> Most users are recommended to use the Windows installer, which installs and >> configures the TPP and other required software (such as a web server). >> For advanced users who need to customize the TPP, or for those who run >> on Linux or OS X, you can download the source code. >> >> >> == Release Notes == >> >> * Release notes on the most important new features, changes, and known >> issues are available at: >> >> "http://tools.proteomecenter.org/wiki/index.php?title=TPP:4.8 >> .0_Release_Notes" >> >> >> == Getting the TPP Software == >> >> * Download the TPP version 4.8.0 native windows installer from the >> Sashimi SourceForge project file release page: >> >> "http://sourceforge.net/ >> <http://goog_2056063534>http://sourceforge.net/projects/sashimi/files/Trans-Proteomic >> Pipeline (TPP)" >> >> * Everyone is encouraged to read and contribute to our wiki, at >> "http://tools.proteomecenter.org/wiki/"; >> >> * For guides to installing and using our software, please see our wiki: >> "http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP"; >> >> * For downloading the source code, please go to the following link: >> "http://sourceforge.net/projects/sashimi/files/"; and find the 4.8.0 >> source code .zip package; >> or, check out the code directly from svn: >> "svn co svn://svn.code.sf.net/p/sashimi/code/tags/release_4-8-0" >> >> For building from source, please refer to the README and INSTALL files in >> src/ >> directory of TPP as well as the wiki. >> >> >> == Acknowledgements == >> >> The TPP Team: Luis, David, Mike, and Joe, plus all other developers who >> contributed to this release from the ISB. Thanks to developers and >> users from the TPP's user community who also provide feedback and code >> contributions. >> >> >> -- >> Joe Slagel >> Institute for Systems Biology >> [email protected] >> >> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- Joe Slagel Institute for Systems Biology [email protected] -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
