Hi,
I want to use the TPP to combine, Mascot, X!Tandem and MSGF+ searches (amongst other things). I'm having trouble getting around some of the basics. I have successfully used the TPP in the past to process samples, but only with Mascot data. Once I get my MSGF+ output files converted to pepXML I should be fine. I cannot work out how I get the MSGF+ files converted. The output generated by MSGF+ is an mzid file. I am also unclear as to where the database (with decoys) and mzXML files, used for searching, need to be located when generating this pepXML file. I have noticed error messages in the logs about accessing the database and mzXML file. I am generally using the Petunia interface as it's much nicer to work with multiple files. Thanks, Peter -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
