Hi David, I can cope with the command line. Thanks for the info I never would have worked that one out...
Peter On Thursday, July 9, 2015 at 2:55:41 PM UTC+10, [email protected] wrote: > > Hi, > > > I want to use the TPP to combine, Mascot, X!Tandem and MSGF+ searches > (amongst other things). I'm having trouble getting around some of the > basics. I have successfully used the TPP in the past to process samples, > but only with Mascot data. > > Once I get my MSGF+ output files converted to pepXML I should be fine. I > cannot work out how I get the MSGF+ files converted. The output generated > by MSGF+ is an mzid file. I am also unclear as to where the database (with > decoys) and mzXML files, used for searching, need to be located when > generating this pepXML file. I have noticed error messages in the logs > about accessing the database and mzXML file. I am generally using the > Petunia interface as it's much nicer to work with multiple files. > > > Thanks, > > > Peter > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
