Dear Rachel,

Well 300 pepXML files are a whole lot of files to feed to iProphet.  You
say that it can only run with one thread, what happens when you try to use
more?  The output generated by it would also be helpful to see.    Are you
tracking the memory usage on your machine?

Thanks,
-David

On Wed, Oct 21, 2015 at 1:10 AM, Rachel <[email protected]> wrote:

> Dear David,
>
> I am trying your iprophet 64-bit command on my ~300 pepxml files, but it
> can only be run with one thread. It is superslow. I let it run for 4 days
> till now and it seems not moving. It is not dying also.
> Can you please help?
>
> Thanks,
> Rachel
>
> On Wednesday, July 22, 2015 at 3:00:11 PM UTC+8, Rachel wrote:
>
>> I tried to merge ~300 pepxml files using xinteract, it failed for the
>> command line is too long. Can anyone tell what is maximum no of pepxml we
>> can merge using xinteract?
>>
>> Thanks so much!
>>
>> Rachel
>>
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