Here there is more detail:
Total number of spectra in library: 2879
Total number of distinct peptide ions in library: 2349
Total number of distinct stripped peptides in library: 2298
CHARGE +1: 0 ; +2: 2098 ; +3: 781 ; +4: 0 ; +5: 0 ; >+5: 0 ;
Unk: 0
TERMINI Tryptic: 2404 ; Semi-tryptic: 462 ; Non-tryptic: 13
PROBABILITY >0.9999: 61 ; 0.999-0.9999: 1236 ; 0.99-0.999: 936 ;
0.9-0.99: 421 ; <0.9: 225
NREPS 20+: 0 ; 10-19: 0 ; 4-9: 0 ; 2-3: 0 ; 1: 2879
MODIFICATIONS E,Glu->pyro-Glu: 215
K,TMT6plex: 197
Q,Gln->pyro-Glu: 101
n,TMT6plex: 2879
On Wednesday, August 31, 2016 at 8:48:09 PM UTC-4, Ali wrote:
>
> Hi
>
> I want to create a library from a pep.xml file which is the result of X!
> Tandem search (I converted the X!Tandem to pep.xml using Tandem2XML) using
> spectrast with the following simple command:
>
> spectrast -cN1607011A_NC20A_10ul_180min.splib -cP0.9
> 1607011A_NC20A_10ul_180min.tandem.pep.xml
>
> I receive the following error:
>
> SpectraST finished at Wed Aug 31 15:08:36 2016 with 195 error(s):
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]CPRAAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.02812.02812.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MAAAAAQGGGGGEPR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.02849.02849.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MSGGGGGGGSAPSR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.03003.03003.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GGGGQR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.03085.03085.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GGLLGR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.03108.03108.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GGGGQR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.03354.03354.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MAAAAGGGSCPGPGSAR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.03413.03413.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MATANGAVENGQPDR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.03452.03452.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GGLVAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.03464.03464.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]LAGGVR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.03465.03465.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MSVQVAAPGSAGLGPER". Skipped spectrum
> 1607011A_NC20A_10ul_180min.03771.03771.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]DAGSER".
> Skipped spectrum 1607011A_NC20A_10ul_180min.03826.03826.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]LAGGVR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.03846.03846.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]IIGPRGPGSQR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.03857.03857.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]RRPRQGGGGAGGSAAAR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.03870.03870.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]APGVAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.03873.03873.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]PPCSGGDGSTPPGPSLR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.03903.03903.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MNNAGHGPTRR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.03906.03906.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]VSSGCR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.04014.04014.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]EDAAAPGR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.04033.04033.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]ATGGDDPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.04047.04047.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]DGGAASQDESSAAAAAAADSR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.04240.04240.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]ACAGSTR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.04383.04383.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MGGGGSALR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.04389.04389.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]LASGPAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.04425.04425.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]DASGRAAAEGWR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.04557.04557.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MHPAGLAAAAAGTPR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.04586.04586.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]PEAGATLR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.04738.04738.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MGTAAAAAAAAAAAAAGEGAR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.05039.05039.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAAAGPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.05094.05094.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]PGGPSPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.05100.05100.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]ERGGAGGGPGGAGGGSGQR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.05205.05205.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]ERGGAGGGPGGAGGGSGQR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.05214.05214.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]ERGGAGGGPGGAGGGSGQR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.05221.05221.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]ERGGAGGGPGGAGGGSGQR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.05235.05235.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]GTAAAAAAAAAAAAAGEGAR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.05378.05378.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GAAGSDGR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.05586.05586.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MSVQVAAPGSAGLGPER". Skipped spectrum
> 1607011A_NC20A_10ul_180min.05662.05662.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAAPPAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.05706.05706.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AAPVAAGSGAGR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.05716.05716.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MAAAAGGGSCPGPGSAR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.05833.05833.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MGSVGSQR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06095.06095.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAAAAQSR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06135.06135.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGSGAGVR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06378.06378.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MDSGAGGRR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06449.06449.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MGRAAATAGGGGGARR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.06460.06460.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MSSGGGSR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06471.06471.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]DPAPAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06521.06521.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MGPGPSR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06526.06526.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]SSCSGLSR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06577.06577.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]PGGAGAAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06584.06584.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GFGPGLTAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06635.06635.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MEPGSAEMPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06742.06742.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MRSGAAPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06824.06824.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]SGAAGAAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06871.06871.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AAAAAGLGGGGAGPGPEAGDFLAR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.06879.06879.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GAAAESGR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06903.06903.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AAVAAALAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06951.06951.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAAIPALD".
> Skipped spectrum 1607011A_NC20A_10ul_180min.06954.06954.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GGTTSTRR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07004.07004.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAGAAPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07207.07207.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MASDAVQSEPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07208.07208.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MAAPAGGGGSAVSVLAPNGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.07211.07211.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]FGGPGPGVLGAQGMAGPLR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.07272.07272.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]RPLAGGSR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07288.07288.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]SGAAGAAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07350.07350.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MGGCAGSR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07380.07380.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]PSGEER".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07404.07404.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MSAPVGPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07444.07444.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]ATSGDCPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07583.07583.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MGPGPSR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07610.07610.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAEGGFD".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07708.07708.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AVCGGAAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07724.07724.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]VSVPGPAAAAAPAAGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.07838.07838.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]SPAAAAAGAGER".
> Skipped spectrum 1607011A_NC20A_10ul_180min.07988.07988.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MSPGASR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08063.08063.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AAGAGAPGNPED".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08072.08072.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AAGAGAPGNPED".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08094.08094.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]DGVAGPQLGAAAEAAEAAEAR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.08098.08098.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGGAWGR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08180.08180.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MPGEAAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08206.08206.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AAPYPGSGGGSEVK[357]". Skipped spectrum
> 1607011A_NC20A_10ul_180min.08321.08321.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MAVAVGVRAAPVLGLAR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.08406.08406.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGSGAGVR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08430.08430.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGSGAGVR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08433.08433.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]SPEAQPQR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08477.08477.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]SGFSTEER".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08492.08492.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GNAPSQD".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08511.08511.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GGGVCVGR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08531.08531.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGSGAGVR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08548.08548.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AAAVAGMLR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08552.08552.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]EAAVGVPDGGDQGGAGPR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.08642.08642.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AAAGGAASR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08768.08768.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]ALNVAPVR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08854.08854.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MAAAEEGCSVGAEADR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.08971.08971.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]PGILVGGAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.08998.08998.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AAAGAAVAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09035.09035.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MHGGGPPSGDSACPLR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.09094.09094.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AAQGVGPGPGSAAPPGLEAAR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.09099.09099.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AAAAGGAASR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09119.09119.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]SGAAGAAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09199.09199.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AAAEER".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09255.09255.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]PGILVGGAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09269.09269.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGGAWGR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09348.09348.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]TGGAHSR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09380.09380.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]PNCSCAAGVSCTCASSCK[357]". Skipped spectrum
> 1607011A_NC20A_10ul_180min.09414.09414.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GPVPSR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09426.09426.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MPGGPSPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09537.09537.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGGAWGR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09639.09639.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AGPGSTGGQIGAAALAGGAR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.09659.09659.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGSGAGVR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09694.09694.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]GGGPSGGGPGGSGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.09722.09722.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]GGGPSGGGPGGSGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.09723.09723.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAAGGSAPEPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09727.09727.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MGGEQEEER".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09733.09733.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAAGGSAPEPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09746.09746.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAAGGSAPEPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09782.09782.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGSGAGVR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09801.09801.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAAGGSAPEPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09855.09855.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GVSALLAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.09869.09869.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]GGGPSGGGPGGSGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.09906.09906.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]SGAGGRR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.10082.10082.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AAAAAAAAAAGAAGGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.10143.10143.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AAAAAAAAAAGAAGGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.10163.10163.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AAAAAAAAAAGAAGGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.10324.10324.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AAAAAAAAAAGAAGGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.10369.10369.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MPGPPALR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.10601.10601.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]GGGPSGGGPGGSGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.10854.10854.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]GGGPSGGGPGGSGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.10855.10855.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MASEASVR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.10910.10910.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]GGGPSGGGPGGSGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.10933.10933.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAAVGSGGYAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.10976.10976.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MSSEDR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.10991.10991.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]SGAAGAAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.11115.11115.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MASATED".
> Skipped spectrum 1607011A_NC20A_10ul_180min.11259.11259.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]ASVAAAARR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.11363.11363.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AELGAGGDGHR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.11367.11367.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AELGAGGDGHR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.11369.11369.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MEEGAPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.11427.11427.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGGSDPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.11445.11445.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]FLLGLR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.11584.11584.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AGGGGGSSK[357]". Skipped spectrum
> 1607011A_NC20A_10ul_180min.11673.11673.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]LPPPPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.11826.11826.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGGSDPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.11957.11957.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]ELGAGGDGHR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.12159.12159.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GAAGAGAPGNPED".
> Skipped spectrum 1607011A_NC20A_10ul_180min.12280.12280.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MELGGPGAPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.12308.12308.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGGAWGR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.12420.12420.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MELGGPGAPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.12496.12496.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGGSDPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.12559.12559.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MASASGAMAK[357]". Skipped spectrum
> 1607011A_NC20A_10ul_180min.12580.12580.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GRAGGGGPGR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.12788.12788.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MSELADSGPSGASAPSQLR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.12809.12809.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GSGGGAGER".
> Skipped spectrum 1607011A_NC20A_10ul_180min.13091.13091.2 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MATSGANGPGSATASASNPR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.13144.13144.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]ANGDSPPWSPALAAEGRGSSCEVR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.13183.13183.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MAGAGSEAR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.13366.13366.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]RSPGGILLQALPR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.13403.13403.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MGVALR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.13432.13432.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MATSFR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.13484.13484.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MTEPGASPED".
> Skipped spectrum 1607011A_NC20A_10ul_180min.13555.13555.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MTEPGASPED".
> Skipped spectrum 1607011A_NC20A_10ul_180min.13607.13607.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GGAGGGPGLR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.13613.13613.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]MTEPGASPED".
> Skipped spectrum 1607011A_NC20A_10ul_180min.13725.13725.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AALHTTPDSPAAQLER". Skipped spectrum
> 1607011A_NC20A_10ul_180min.13774.13774.3 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AAAGPSTR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.13888.13888.2 .
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]RSGGGCSGSLSLR".
> Skipped spectrum 1607011A_NC20A_10ul_180min.14320.14320.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]ATVVDAVNAAPLSGSK[357]". Skipped spectrum
> 1607011A_NC20A_10ul_180min.14447.14447.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MEAAFGQVAGSACPRR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.14956.14956.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MAASAGAGAVIAAPDSR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.15253.15253.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MGGAGALGGAGGVQGAAGR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.15317.15317.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]TTFLQTSSSTFGGGSTR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.15616.15616.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MLPWTALGLALSLRLALAR". Skipped spectrum
> 1607011A_NC20A_10ul_180min.16176.16176.3 .
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MASGAGGVGGGGGGK[357]"
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MVK[357]EGAAVIDVGINYV
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MRQGLLVLALVLVLVLVLAAG
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AAIYGGVEGGGTR".
> Skipp
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]LGSDDFFYVGGSPSTADLPGS
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]EGGPAVCCQDPRAELVER".
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AAAAMAAAAGGGAGAARSLSR
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]LNGGGSGAGGSRGGGQER".
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]RRALLLLLLSFLAPWATIALR
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]APGALAQTAAPGPGR". Ski
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MAGDLSAGFFMEELNTYR".
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]GAAARLSAPR".
> Skipped
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]SSYDEASLAPEETTDSFWEVG
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]APRALPGSAVLAAAVFVGGAV
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MSHYGSYYGGLGYSCGGFGGL
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MDGASSGGGGSSEGGGGSSGS
> PEPXML IMPORT: Peptide ID has unknown modification: "n[272]AGAAAGGR".
> Skipped sp
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]SCARLLLLWGCTVVAAGLSGV
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]ASTSRDVIAGRGIHSK[357]
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]TESASCSTARQTK[357]".
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]MARAGWTGLLPLYVCLLLTCG
> PEPXML IMPORT: Peptide ID has unknown modification:
> "n[272]AAAAPAAAAASSEAPAASATA
>
>
> Does any body knows what might be the problem? I am relatively new in TPP
> and proteomics so I would appreciate if you could explain a little in
> detail.
>
> Thank you very much
>
>
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