Thanks for taking the time to reply. No I haven't, but Michael Hoopmann developed a tool that works around the problem that we are currently testing.
Regards, Francesca On Monday, January 16, 2017 at 4:44:42 PM UTC-5, Francesca Barry wrote: > > I would like to convert the .pep.xml files I am obtaining from Comet in > the TPP into mzid files. However the converter module in the TPP only > converts .prot.xml files to mzid files. I want to use .pep.xml files in > order to keep some peptide level information, which is not kept in the > .prot.xml files generated by TPP. > > > I have also tried using idConvert straight from ProteoWizard, but the > script crashes on the file with the following error: > > [UnimodData::ctor] error parsing term "UNIMOD:454": > [UnimodData::getBrickFormula] unknown element or brick "HexN" > > > Has anybody encountered this problem before? > > Could someone help me find a way to convert those .pep.xml files into > .mzid files? > > > Thank you! > > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
