Hi, have you tried to convert the files after PeptideProphet validation?
Best Regards,
Robert
On 16/01/17 15:44, Francesca Barry wrote:
I would like to convert the .pep.xml files I am obtaining from Comet
in the TPP into mzid files. However the converter module in the TPP
only converts .prot.xml files to mzid files. I want to use .pep.xml
files in order to keep some peptide level information, which is not
kept in the .prot.xml files generated by TPP.
I have also tried using idConvert straight from ProteoWizard, but the
script crashes on the file with the following error:
[UnimodData::ctor] error parsing term "UNIMOD:454":
[UnimodData::getBrickFormula] unknown element or brick "HexN"
Has anybody encountered this problem before?
Could someone help me find a way to convert those .pep.xml files into
.mzid files?
Thank you!
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