ProteinPilot is not a supported search engine at this time. If you can provide your pepXML files for testing we can implement this functionality in a future release.
-David On Mon, Jan 23, 2017 at 2:24 PM, Ivan Silbern <[email protected]> wrote: > Dear All, > > my general question would be whether it is possible to build a spectral > library with spectrast starting from ProteinPilot search file. > > Specifically, I have converted ProteinPilot .group file to mzid with PP > itself, then to pepXML with "idconverter" > Underlying .wiff file was converted with ABSciex_MS_Converter to .mzML and > located in the same directory as .pepXML file. > Now, when I supply my .pepXML file to "PeptideProphet" an error appears: > >> >> C:\WINDOWS\system32>c:\TPP\bin\xinteract.exe g:\TPP\data\EEXL1-2_SG_AP_1_ > annot4_mod2.pep.xml > > c:\TPP\bin\xinteract.exe (TPP v5.0.0 Typhoon, Build 201610111222-7423 > (Windows_NT-x86_64)) > > running: "C:/TPP/bin/InteractParser "C:/tmp/a13260/interact.pep.xml" > "g:\TPP\data\EEXL1-2_SG_AP_1_annot4_mod2.pep.xml" -L"7"" > terminate called after throwing an instance of 'boost::exception_detail:: > clone_impl<boost::exception_detail::error_info_injector< > std::ios_base::failure[abi:cxx11]> >' > what(): failed opening file: ═х єфрхЄё эрщЄш єърчрээ√щ Їрщы. > : iostream error > > This application has requested the Runtime to terminate it in an unusual > way. > Please contact the application's support team for more information. > > command "C:/TPP/bin/InteractParser "C:/tmp/a13260/interact.pep.xml" > "g:\TPP\data\EEXL1-2_SG_AP_1_annot4_mod2.pep.xml" -L"7"" failed: No such > process > > command "C:/TPP/bin/InteractParser "C:/tmp/a13260/interact.pep.xml" > "g:\TPP\data\EEXL1-2_SG_AP_1_annot4_mod2.pep.xml" -L"7"" exited with > non-zero exit code: 3 > QUIT - the job is incomplete > >> >> > More specified input (c:\TPP\bin\xinteract.exe > g:\TPP\data\EEXL1-2_SG_AP_1_annot4_mod2.pep.xml > -Dg:\TPP\data\20161219_XL-XT_Uniprot_iRT_SUMO_NB_cRAP_annot4.fasta > -ag:\TPP\data\ -NEEXL1-2_SG_AP_1_Interact.pep.xml -p0.99 -dRRRRR -ORAPd ) > produces the same error. > > > > I would really appreciate any help in fixing it if it is possible. > > Thanks a lot in advance, > > Ivan > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
