Thanks, we're checking on that now.

But if you don't invoke the "t" option, what is the expected syntax that 
should pass to ProteinProphet?

Should it then do a PLOTPNG then since you're not telling it to do a 
NOPLOT? I noticed that xinteract doesn't have an option to indicate that 
you want to do plotting.

Thanks,

-Jon

On Monday, December 11, 2017 at 4:51:53 PM UTC-8, Luis wrote:
>
> Hi Jon,
>
> We'll look into removing that option from xinteract.  Are you able to run 
> your pipeline without invoking the "t" option?
>
> Cheers,
> --Luis
>
>
> On Mon, Dec 11, 2017 at 4:18 PM, <jo...@labkey.com <javascript:>> wrote:
>
>> Hi,
>>
>> First time here. I noticed that since TPP 5.0, the NOPLOT option was 
>> removed:
>>
>>
>> http://tools.proteomecenter.org/wiki/index.php?title=TPP:5.0.0_Release_Notes
>>
>> However, if you check xinteract, the "t" option to not create a png data 
>> plot still exists.
>>
>> This is a bit problematic if you're having xinteract pipe in commands to 
>> ProteinProphet since the "t" option will insert in the NOPLOT option and 
>> then fail.
>>
>> Is this being addressed anywhere or has anyone found an appropriate 
>> workaround for this?
>>
>> Thanks,
>>
>> -Jon
>>
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