Hi Mike,
Thanks for your response. This error is gone after the sprintf change you
suggested but I now get the following error and couple of warnings when I
run `make install`.
*Error:*
*TPP/5.1.0/TPP_5.1.0-src/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParserMain.cpp:47:16:*
*fatal
error: *gd.h: No such file or directory
#include "gd.h"
* ^*
compilation terminated.
*Warnings:*
warning: "BOOST_NO_CXX11_SCOPED_ENUMS" redefined [enabled by default]
and
TPP/5.1.0/TPP_5.1.0-src/src/Parsers/mzIMLTools/mzIMLDemo/PepXMLParser3.cpp:363:43:
warning: deprecated conversion from string constant to ‘char*’
[-Wwrite-strings]
mod.massStd=calcMonoMass("E",false)-18.0105633;
Regards,
Monica
On Wednesday, February 14, 2018 at 6:04:12 PM UTC-5, Michael Hoopmann wrote:
>
> Hi Monica,
>
> Thanks for reporting the bug. I have a fix for the source tree, but
> sourceforge is having problems right now. You can add the fix manually,
> though, by going into CProteinAmbiguityGroup.cpp and changing:
>
>
>
> sprintf(dbid, "%s_%d", baseRef, proteinDetectionHypothesis->size());
>
>
>
>
>
> to
>
>
>
> sprintf(dbid, "%s_%d", &baseRef[0], proteinDetectionHypothesis->size());
>
>
>
>
>
> Cheers,
>
> Mike
>
>
>
> *From:* [email protected] <javascript:> [mailto:
> [email protected] <javascript:>] *On Behalf Of *Monica HPC
> *Sent:* Wednesday, February 14, 2018 10:04 AM
> *To:* spctools-discuss
> *Subject:* [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error
>
>
>
> Hi there!
>
>
>
> I am trying to install the newer version of TPP 5.1.0 on RedHat Enterprise
> Linux 7 server and I am getting the following error and warning after
> running `make install`.
>
>
>
> I have installed all the prerequite libraries mentioned in the BUILD_LINUX
> documentation:
>
> *libgd2*
>
> *libpng*
>
> *zlib*
>
> *libbz2*
>
>
>
> *WARNING:*
>
> TPP/5.1.0/TPP_5.1.0-src/build/linux-x86_64/include/boost/config/compiler/gcc.hpp:205:0:
>
> warning: "BOOST_NO_CXX11_SCOPED_ENUMS" redefined [enabled by default]
>
> # define BOOST_NO_CXX11_SCOPED_ENUMS
>
> ^
>
>
>
> *ERROR:*
>
> TPP/5.1.0/TPP_5.1.0-src/src/Parsers/mzIMLTools/CProteinAmbiguityGroup.cpp:106:69:
>
> error: cannot pass objects of non-trivially-copyable type ‘std::string {aka
> class std::basic_string<char>}’ through ‘...’
>
> sprintf(dbid, "%s_%d", baseRef, proteinDetectionHypothesis->size());
>
>
>
> Am I missing something or is it a bug in the code?
>
>
>
> Please do let me know if there is any workaround to fix this issue.
>
>
>
> Thanks,
>
> Monica
>
> --
> You received this message because you are subscribed to the Google Groups
> "spctools-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to [email protected] <javascript:>.
> To post to this group, send email to [email protected]
> <javascript:>.
> Visit this group at https://groups.google.com/group/spctools-discuss.
> For more options, visit https://groups.google.com/d/optout.
>
--
You received this message because you are subscribed to the Google Groups
"spctools-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at https://groups.google.com/group/spctools-discuss.
For more options, visit https://groups.google.com/d/optout.
