I believe you need to have libgd2 (or libgd2-dev) installed.
J
On Tuesday, February 20, 2018 at 12:26:57 PM UTC-5, Monica HPC wrote:
>
> Hi Mike,
>
> Thanks for your response. This error is gone after the sprintf change you
> suggested but I now get the following error and couple of warnings when I
> run `make install`.
>
> *Error:*
>
>
> *TPP/5.1.0/TPP_5.1.0-src/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParserMain.cpp:47:16:*
> *fatal
> error: *gd.h: No such file or directory
>
> #include "gd.h"
>
> * ^*
>
> compilation terminated.
>
>
> *Warnings:*
>
> warning: "BOOST_NO_CXX11_SCOPED_ENUMS" redefined [enabled by default]
>
>
> and
>
>
> TPP/5.1.0/TPP_5.1.0-src/src/Parsers/mzIMLTools/mzIMLDemo/PepXMLParser3.cpp:363:43:
>
> warning: deprecated conversion from string constant to ‘char*’
> [-Wwrite-strings]
>
> mod.massStd=calcMonoMass("E",false)-18.0105633;
>
>
> Regards,
>
> Monica
>
> On Wednesday, February 14, 2018 at 6:04:12 PM UTC-5, Michael Hoopmann
> wrote:
>>
>> Hi Monica,
>>
>> Thanks for reporting the bug. I have a fix for the source tree, but
>> sourceforge is having problems right now. You can add the fix manually,
>> though, by going into CProteinAmbiguityGroup.cpp and changing:
>>
>>
>>
>> sprintf(dbid, "%s_%d", baseRef, proteinDetectionHypothesis->size());
>>
>>
>>
>>
>>
>> to
>>
>>
>>
>> sprintf(dbid, "%s_%d", &baseRef[0], proteinDetectionHypothesis->size());
>>
>>
>>
>>
>>
>> Cheers,
>>
>> Mike
>>
>>
>>
>> *From:* [email protected] [mailto:[email protected]]
>> *On Behalf Of *Monica HPC
>> *Sent:* Wednesday, February 14, 2018 10:04 AM
>> *To:* spctools-discuss
>> *Subject:* [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error
>>
>>
>>
>> Hi there!
>>
>>
>>
>> I am trying to install the newer version of TPP 5.1.0 on RedHat
>> Enterprise Linux 7 server and I am getting the following error and warning
>> after running `make install`.
>>
>>
>>
>> I have installed all the prerequite libraries mentioned in the
>> BUILD_LINUX documentation:
>>
>> *libgd2*
>>
>> *libpng*
>>
>> *zlib*
>>
>> *libbz2*
>>
>>
>>
>> *WARNING:*
>>
>> TPP/5.1.0/TPP_5.1.0-src/build/linux-x86_64/include/boost/config/compiler/gcc.hpp:205:0:
>>
>> warning: "BOOST_NO_CXX11_SCOPED_ENUMS" redefined [enabled by default]
>>
>> # define BOOST_NO_CXX11_SCOPED_ENUMS
>>
>> ^
>>
>>
>>
>> *ERROR:*
>>
>> TPP/5.1.0/TPP_5.1.0-src/src/Parsers/mzIMLTools/CProteinAmbiguityGroup.cpp:106:69:
>>
>> error: cannot pass objects of non-trivially-copyable type ‘std::string {aka
>> class std::basic_string<char>}’ through ‘...’
>>
>> sprintf(dbid, "%s_%d", baseRef, proteinDetectionHypothesis->size());
>>
>>
>>
>> Am I missing something or is it a bug in the code?
>>
>>
>>
>> Please do let me know if there is any workaround to fix this issue.
>>
>>
>>
>> Thanks,
>>
>> Monica
>>
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