Hi Kamal, I’m not certain what would be best, but suppose you just install the TPP in your own area under your username. So, based on the instructions here:
http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.2.0:_Installing_on_Ubuntu_18.04_LTS You could install TPP in a space off your home directory and then use it that way on the cluster. Maybe something like this: Assume your home directory is /home/kmandal, you could try something like this: cd /home/kmandal mkdir tpp svn data cd svn svn checkout svn:// svn.code.sf.net/p/sashimi/code/trunk/trans_proteomic_pipeline echo "INSTALL_DIR = /users/kmandal/tpp" > site.mk echo "TPP_DATADIR = /users/kmandal/data" >> site.mk make all make install If that all works, then the TPP executables are all in /users/kmandal/tpp/bin The possible snag is that you still need to have the equivalents of these requirements installed on your machine to compile it: sudo apt --yes install subversion sudo apt --yes install build-essential sudo apt --yes install perl sudo apt --yes install zlib1g-dev sudo apt --yes install libghc-bzlib-dev sudo apt --yes install gnuplot sudo apt --yes install unzip sudo apt --yes install expat sudo apt --yes install libexpat1-dev Maybe your machine has all these already, or maybe not. Do you have a sys administrator that you can ask to install those components? What version of Linux is your cluster running, do you know? Regards, Eric *From:* [email protected] <[email protected]> *On Behalf Of *Kamal Mandal *Sent:* Thursday, November 15, 2018 7:02 PM *To:* spctools-discuss <[email protected]> *Subject:* [spctools-discuss] Linux version of TPP Hello, Can anybody help me with the link for downloading the linux version of TPP. The available recipe of installation doesn't work for me since I cannot use "sudo" in our cluster. I can install it only in my own space. -Kamal -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
