HI Eric, Thanks a lot for your quick response. Actually I tried this way but didn't work. I am not very much expert in computation, but it looks like "svn" command is not working in our cluster. I thought if I download the entire package, that might help. Can you suggest some way out of it? Here is the specification of our cluster - "CentOS Linux 7 (Core)"
-Kamal On Thu, Nov 15, 2018 at 9:07 PM Eric Deutsch <edeut...@systemsbiology.org> wrote: > Hi Kamal, I’m not certain what would be best, but suppose you just install > the TPP in your own area under your username. So, based on the instructions > here: > > > http://tools.proteomecenter.org/wiki/index.php?title=TPP_5.2.0:_Installing_on_Ubuntu_18.04_LTS > > > > You could install TPP in a space off your home directory and then use it > that way on the cluster. Maybe something like this: > > Assume your home directory is /home/kmandal, you could try something like > this: > > > > cd /home/kmandal > > mkdir tpp svn data > > cd svn > > svn checkout svn:// > svn.code.sf.net/p/sashimi/code/trunk/trans_proteomic_pipeline > > echo "INSTALL_DIR = /users/kmandal/tpp" > site.mk > > echo "TPP_DATADIR = /users/kmandal/data" >> site.mk > > make all > > make install > > > > If that all works, then the TPP executables are all in > /users/kmandal/tpp/bin > > > > The possible snag is that you still need to have the equivalents of these > requirements installed on your machine to compile it: > > > > sudo apt --yes install subversion > > sudo apt --yes install build-essential > > sudo apt --yes install perl > > sudo apt --yes install zlib1g-dev > > sudo apt --yes install libghc-bzlib-dev > > sudo apt --yes install gnuplot > > sudo apt --yes install unzip > > sudo apt --yes install expat > > sudo apt --yes install libexpat1-dev > > > > Maybe your machine has all these already, or maybe not. Do you have a sys > administrator that you can ask to install those components? > > > > What version of Linux is your cluster running, do you know? > > > > Regards, > > Eric > > > > > > *From:* spctools-discuss@googlegroups.com < > spctools-discuss@googlegroups.com> *On Behalf Of *Kamal Mandal > *Sent:* Thursday, November 15, 2018 7:02 PM > *To:* spctools-discuss <spctools-discuss@googlegroups.com> > *Subject:* [spctools-discuss] Linux version of TPP > > > > Hello, > > Can anybody help me with the link for downloading the linux version of > TPP. > > The available recipe of installation doesn't work for me since I cannot > use "sudo" in our cluster. I can install it only in my own space. > > > > -Kamal > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > > -- > You received this message because you are subscribed to a topic in the > Google Groups "spctools-discuss" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/spctools-discuss/GOYhdTTMOJo/unsubscribe > . > To unsubscribe from this group and all its topics, send an email to > spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- Kamal Mandal, M.Tech Research Scholar National Institute of Immunology, New Delhi Aruna Asaf Ali Marg New Delhi - 110067 *India* *Contact no. :- +91- 9560445356 * -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
