Hi Ankit; Please feel free to submit your DIA-Umpire questions and issues to our DIA-Umpire issue tracker: https://github.com/Nesvilab/DIA-Umpire
Regards On Wednesday, April 3, 2019 at 7:05:59 AM UTC-4, Ankit Balhara wrote: > > Hi All, > > I am analyzing the SWATH-MS data using the DIA-Umpire. And I have 3 data > files of same sample which lead to generation of 9 .mgf output files from > DIA-Umpire, which were converted into 9 mzXML and then subjected to Comet > and X! Tandem search, and subsequently to peptide prophet and hence total > files generated during this process are 18 pep.xml files. > My ultimate aim to build the assay library. So, I am confused how to > combine the results of these 18 peptideprophet files. > > Should I combine the Comet search results of each data file separately and > X! Tandem results separately and then combine these outputs again using > iProphet? This should result in generation of 3 iprophet result files > corresponding to each data file, which can again combined into one file by > iProphet in final step? > > Or there is another way out of this problem? > > Thanks > > Ankit > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
