Thanks Felipe. I have posted this issue in the issues section of DIA-Umpire issue tracker.
Ankit On Thu, 4 Apr 2019 at 19:21, Felipe da Veiga Leprevost < [email protected]> wrote: > Hi Ankit; > > Please feel free to submit your DIA-Umpire questions and issues to our > DIA-Umpire issue tracker: https://github.com/Nesvilab/DIA-Umpire > > Regards > > On Wednesday, April 3, 2019 at 7:05:59 AM UTC-4, Ankit Balhara wrote: >> >> Hi All, >> >> I am analyzing the SWATH-MS data using the DIA-Umpire. And I have 3 data >> files of same sample which lead to generation of 9 .mgf output files from >> DIA-Umpire, which were converted into 9 mzXML and then subjected to Comet >> and X! Tandem search, and subsequently to peptide prophet and hence total >> files generated during this process are 18 pep.xml files. >> My ultimate aim to build the assay library. So, I am confused how to >> combine the results of these 18 peptideprophet files. >> >> Should I combine the Comet search results of each data file separately >> and X! Tandem results separately and then combine these outputs again using >> iProphet? This should result in generation of 3 iprophet result files >> corresponding to each data file, which can again combined into one file by >> iProphet in final step? >> >> Or there is another way out of this problem? >> >> Thanks >> >> Ankit >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
