Dear David Thank you for your answer!, My question was regards this kind of data from MALDI, with no a huge number of spectra. I have diffent dataset but I think my specific question was answered with you explanation.
Thank you again I´m sure I will have more doubts in the future. Regards Carlos El lunes, 20 de julio de 2020, 21:53:20 (UTC-3), David Shteynberg escribió: > > Hi Carlos, > > The TPP is statistical software that takes advantage of statistical trends > in data and requires many data points to work well. Do you have a dataset > of reasonable size with maybe dozens or hundreds of spectra? Also can you > post the file somewhere I can download it? Sending files as email > attachments may not work for larger files. > > Thanks, > -David > > On Mon, Jul 20, 2020 at 5:12 PM Carlos Humberto Paván <[email protected] > <javascript:>> wrote: > >> Dear David >> Thank you your answer and your offer. Of course I can send you the >> dataset. I have attached it. You will note this is a small number of >> spectrums. >> Looking forward your comments >> >> PS I have attached the interact file too with the 0 prob result. >> >> El lunes, 20 de julio de 2020, 13:29:42 (UTC-3), David Shteynberg >> escribió: >>> >>> Dear Carlos, >>> >>> There is probably some bug exposed by the modeling of this type of data >>> with the specific set of options you enabled. If you are able to share a >>> part of your dataset that can replicate the issue, I am able to >>> troubleshoot this further. >>> >>> Thanks, >>> David >>> >>> On Sat, Jul 18, 2020, 12:10 PM Carlos Humberto Paván <[email protected]> >>> wrote: >>> >>>> Dear all >>>> >>>> I have recently installed TTP 5.2 and I´m still learn about it. I´m >>>> stuck at the peptide validation process: I get the follow error next to >>>> run >>>> Peptide Prophet: >>>> "Initialising statistical models ... >>>> >>>> command "C:/TPP/bin/PeptideProphetParser >>>> "/tmp/a04412/params/interact.pep.xml" MINPROB=0.0 CLEVEL=-1 PPM MALDI" >>>> failed: Unknown error >>>> >>>> command "C:/TPP/bin/PeptideProphetParser >>>> "/tmp/a04412/params/interact.pep.xml" MINPROB=0.0 CLEVEL=-1 PPM MALDI" >>>> exited with non-zero exit code: 255 >>>> QUIT - the job is incomplete" >>>> >>>> The data is from a 4800 MALDI, a single spot from gel. >>>> >>>> Regards and Thanks >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to [email protected]. >>>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/spctools-discuss/06da8ba0-99b1-4599-88b0-2743964e44ceo%40googlegroups.com >>>> >>>> <https://groups.google.com/d/msgid/spctools-discuss/06da8ba0-99b1-4599-88b0-2743964e44ceo%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/585fd4e1-bf51-4d3b-a96d-28a6702b7a6eo%40googlegroups.com >> >> <https://groups.google.com/d/msgid/spctools-discuss/585fd4e1-bf51-4d3b-a96d-28a6702b7a6eo%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/9124cb08-b137-435f-b472-fde2f522ab10o%40googlegroups.com.
