I have also been encountering this issue and would love to hear a solution. The search still reads as "Running" but simply stops searching any more mzML files. Depending on the size of my files, the search times out at different points, but will almost never search more than 8 files at a time.
Happy to provide an example dataset + parameters + FASTA file if anyone wants to try and replicate the timeout. -Will On Wednesday, November 10, 2021 at 1:32:09 AM UTC-5 [email protected] wrote: > Hi everyone, > > I've been using TPP for a little while now for the analysis of my data. I > have been using Comet to perform database searching on a large number of > mzml files and have noticed that the analysis will usually time out after > about 6 hours. In this case, I will remove the mzml files that have been > successfully processed and then re-run comet. Is this job time-out an > inherent part of TPP, or is it a setting that can be changed? If the > latter, are there any risks in running the analysis for over 6 hours? > > Thanks in advance for any advice > Steven > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/d7d9a7b5-fe88-40c3-89b6-b23009a13d2fn%40googlegroups.com.
