Use HiCOPS: Will run till the end of time and fast https://hicops.github.io/
On Thu, Dec 16, 2021 at 11:20 AM Will Comstock <[email protected]> wrote: > I have also been encountering this issue and would love to hear a > solution. The search still reads as "Running" but simply stops searching > any more mzML files. Depending on the size of my files, the search times > out at different points, but will almost never search more than 8 files at > a time. > > Happy to provide an example dataset + parameters + FASTA file if anyone > wants to try and replicate the timeout. > > -Will > > On Wednesday, November 10, 2021 at 1:32:09 AM UTC-5 [email protected] > wrote: > >> Hi everyone, >> >> I've been using TPP for a little while now for the analysis of my data. I >> have been using Comet to perform database searching on a large number of >> mzml files and have noticed that the analysis will usually time out after >> about 6 hours. In this case, I will remove the mzml files that have been >> successfully processed and then re-run comet. Is this job time-out an >> inherent part of TPP, or is it a setting that can be changed? If the >> latter, are there any risks in running the analysis for over 6 hours? >> >> Thanks in advance for any advice >> Steven >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/d7d9a7b5-fe88-40c3-89b6-b23009a13d2fn%40googlegroups.com > <https://groups.google.com/d/msgid/spctools-discuss/d7d9a7b5-fe88-40c3-89b6-b23009a13d2fn%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAEWaiLLkoQwqEmTc1wJryfYUW0bPEKdU4_1TkESNbiyBQaQutQ%40mail.gmail.com.
