I have not looked at the schema and queries in detail.
But at a first glance:

> CREATE VIEW v_most_recent_lookup_per_url AS
>      ...
>      ORDER BY url_id;

Drop the ORDER BY; it is useless in a view used in another query,
and just might slow things down.

> 0    1    1    SEARCH TABLE lookups AS l USING AUTOMATIC COVERING INDEX 
> (is_generic_flag=? AND url_id=?)

If SQLite thinks that an AUTOMATIC index is useful, you should consider
creating it explicitly:
  CREATE INDEX lookup_generid_id_idx ON lookups(is_generic_flag, url_id);


Regards,
Clemens
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