Just a fast answer, It's late and I'm tired
 

> and if I do use the "online version" where is my couchDB configuration 
> stored?  Where is my password stored? At github? 
>
> I don't even know where it is stored now with my local version BTW.  I'm 
> thinking a cookie
>

Your passwor IS NEVER STORED, not in the online version, nor on the offline 
version, in any version. I consider that a security risk.
Like most of the modern web services (believe me, hundred of services that 
you use and trust) authentication is managed through cookies.

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