Hi Magnus,

I run into this all the time. Some thoughts...

1) My *work-around* is to adjust the REF 1PPS by tens of microseconds, or even 
500 ms. That avoids running into sign changes and skipped samples when a TIC 
gets near zero. This works really well for stable clocks where 500 ms drift is 
next to impossible.

2) My *solution* is to use time-stamping counters (TSC) instead of time 
interval counters (TIC). With time-stamping you avoid all the hassles of a TIC. 
There is no worry about CH1 vs. CH2, there are no sign changes, there are no 
missed samples, it doesn't matter if the sources are fast or slow, or ahead of 
behind. There is no concept of "start" or "stop", but only "when".

For high-end TSC, I use a CNT-90 (or equiv) and for low-end I use my little 
picPET. It gets even more useful if you have multiple, synchronized time 
stamping counters.

3) The problems you are running into get far worse the less accurate and less 
stable the sources are (such as mains, mechanical, vintage quartz, and pendulum 
clocks). So that's why I developed the picPET time-stamping counter. It's 400 
ns resolution is not good enough for you. Even the new 10 ns version isn't good 
enough for your needs.

But a fellow time nut is working on a 100 ps version which will do both time 
stamping and time interval. That, finally, will solve the problems everyone has 
with TIC's. However, I still use hp 53131A/53132A a lot in my lab and simply 
avoid the TIC problem using #1 above.

4) TimeLab already has support for some time stamping counters -- under Acquire 
click on Timestamp instead of Phase or Frequency.

Alternatively you can write simple tools that translate time stamp data to 
phase difference data or frequency data and then use TimeLab the way you 
usually do. The trick is to use the "Live ASCII file"input option. Also use 
fflush() in your C code (or equiv). That way you retain the real-time display 
feature that TimeLab provides.

/tvb
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