Thanks for the recent update to UMLS::Similarity - I was able to cleanly install it with no errors this time.
I’d like to start up the similarity server on a machine here so that we can make queries to it. I tried running /usr/local/bin/umls_similarity_server.pl but it immediately and silently exits. I re-ran it as /usr/local/bin/umls_similarity_server.pl --logfile umls.log, and umls.log gives me: ------------------------------------------------------------ In setInterface(MSH, PAR/CHD, path) FILENAME: /tmp/Ded6K86IZu CuiFinder User Options: --config option set UMLS-Interface Configuration Information Sources (SAB): MSH Relations (REL): CHD PAR Database: umls (MMSYS-2014AA-20140401) PathFinder User Options: --forcerun option set Setting measures ICFinder User Options: --icpropagation /var/www/umls_similarity/icpropagation/icprop.msh.par.chd Could not open file /var/www/umls_similarity/icpropagation/icprop.msh.par.chd —————————————————————————————— Seems like I need to create some icpropagation files. How do I do that? I looked at: http://search.cpan.org/dist/UMLS-Similarity/utils/create-icpropagation.pl But I don’t know what I should be providing as the OUTPUTFILE and ICFREQUENCY_FILE arguments. While I’m at it, are there other prerequisites to running umls_similarity_server.pl that I should know about before I try to start it again? Thanks, Steve
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