Hi Deepal, I have a patch for cTAKES 2.5 to resolve the problem of batch processing returning fewer results as processing continues due to the permutation list becoming corrupt.
https://issues.apache.org/jira/browse/CTAKES-146 The patch should still apply to ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java Thanks, Kim Ebert 1.801.669.7342 Perfect Search Corp http://www.perfectsearchcorp.com/ On 04/15/2013 01:53 PM, Deepal Dhariwal wrote: > Hello Kim, > > Yeah when I processed record individually blood pressure was annotated > as a medical concept. Can you kindly explain the reason behind this > difference in behavior. > > Thanks so much. > > Regards > Deepal Dhariwal > > > > On Mon, Apr 15, 2013 at 3:39 PM, Kim Ebert > <[email protected] > <mailto:[email protected]>> wrote: > > Hi Deepal, > > Trying running the records individually and see if it identifies > the terms correctly; if so I may have an idea of the problem. > > Thanks, > > Kim Ebert > 1.801.669.7342 <tel:1.801.669.7342> > Perfect Search Corp > http://www.perfectsearchcorp.com/ > > On 04/15/2013 01:36 PM, Deepal Dhariwal wrote: >> Hello Kim, >> >> The records were processed in a batch using UIMA Collection >> processing Engine. >> The parameters for UIMA CPE were as follows: >> Descriptor: UIMA File System Collection Reader >> Analysis Engine: cTAKES Aggregate UMLS Plaintext Processor >> CAS Consumer: XMI Writer CAS Consumer >> >> Thanks >> Deepal Dhariwal >> >> >> On Mon, Apr 15, 2013 at 3:31 PM, Kim Ebert >> <[email protected] >> <mailto:[email protected]>> wrote: >> >> Hi Deepal, >> >> Was either record processed in a batch of records? Or where they >> processed as individual records? >> >> Kim Ebert >> 1.801.669.7342 <tel:1.801.669.7342> >> Perfect Search Corp >> http://www.perfectsearchcorp.com/ >> >> On 04/15/2013 12:49 PM, Deepal Dhariwal wrote: >> > Hello all, >> > >> > I have 2 medical records with the following content: >> > >> > Record 1 : >> > He went to the hospital Emergency Room where his blood >> pressure was >> > 120 / 80 , heart rate 94. >> > >> > Record 2: >> > Weight 197 lbs, up to 6 lbs, blood pressure 128/88, heart >> rate 70 . >> > >> > In the first record blood pressure is getting annotated as >> a Clinical >> > Entity Mention and a Medical Concept while in second record >> blood >> > pressure is not getting annotated as a clinical entity. >> > >> > Could someone shed some light on why the difference in >> behavior ? I >> > have attached the screenshots for reference. >> > >> > Regards >> > Deepal Dhariwal >> >> > >
