I think the error is in the ytex.profile file. I am not really sure though. I am attaching the file. Please let me know if there is anything to be changed in the file that might fix the issue. Thanks.
On Wed, Jun 11, 2014 at 10:04 PM, Lee, Richard A. [USA] <[email protected] > wrote: > This is the same error I reported a few weeks ago, but it probably got > missed because I was also reporting that using the ytex-specific AE failed > to produce any MedicalAnnotations… > > > > *From:* Abhishek Raj [mailto:[email protected]] > *Sent:* Wed, 11 Jun, 2014 12:11 > *To:* [email protected] > *Subject:* [External] Re: Cannot load AggregatePlainTextUmlsProcessor.xml > > > > Thanks for the reply. I am using apace-cTakes-3.1.2 and yes, this is using > YTEX. I followed these > <https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation> > instructions > for installing ytex and #1 in the installation procedure was " installing > ctakes+ytex > distro 'as usual' " by following these > <https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1+User+Install+Guide> > instructions. > Not sure what is the reason for the error though. I have UMLS installed in > my SQL database already. > > > > On Wed, Jun 11, 2014 at 9:24 PM, Chen, Pei <[email protected]> > wrote: > > Abhishek, > > There is an SQL exception because of the “@db.schema@.” in the sql: > > SELECT tui,cui,tok_str FROM @[email protected]_snomed_fword_lookup WHERE fword > = ? > > > > Which version of cTAKES are you using and also is this using YTEX? As I > am not sure where the special parameter markers are coming from. Normally, > it would look something like: > > > http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-dictionary-lookup-res/src/main/resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml > > > > > > > > > > *From:* Abhishek Raj [mailto:[email protected]] > *Sent:* Wednesday, June 11, 2014 11:39 AM > *To:* [email protected] > *Subject:* Re: Cannot load AggregatePlainTextUmlsProcessor.xml > > > > Hey! Thanks a lot for the reply. That totally worked. However, I have run > into another problem now. After loading the > "AggregatePlainTextUmlsProcessor.xml", when I try to run the it on some > text sample I get an error saying > > org.apache.uima.analysis_engine.AnalysisEngineProcessException . More > detailed information is in the log file > > > I have attached the log in the attachments. Please do have a look. Any > help will be appreciated. > > > > On Wed, Jun 11, 2014 at 7:06 PM, Chen, Pei <[email protected]> > wrote: > > Abhishek, > > Have you tried some of the suggestions from this thread: > > > http://mail-archives.apache.org/mod_mbox/ctakes-dev/201304.mbox/%3CCD84AD35.169BD%25mcoarr%40mitre.org%3E > > > > > > *From:* Abhishek Raj [mailto:[email protected]] > *Sent:* Wednesday, June 11, 2014 4:17 AM > *To:* [email protected] > *Subject:* Cannot load AggregatePlainTextUmlsProcessor.xml > > > > Hello I installed ctakes following > https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation and > https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1+User+Install+Guide > . After installation I ran the CVD for annotation purpose. When I try to > load the AggregatePlainTextUmlsProcessor.xml I get error saying > > org.apache.uima.resource.ResourceInitializationException: > > Initialization of annotator class > > "org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator" > failed. (Descriptor: > file:/home/gamerboy/apache-ctakes-3.1.2-SNAPSHOT/desc/ctakes-dictionary-lookup/desc/analysis_engine/DictionaryLookupAnnotatorUMLS.xml) > > > > I am behind a proxy network. Not sure this could be the reason though. > > > > >
ytex.properties
Description: Binary data
