Found a fix. Will post it here in case it helps someone. When using ctakes-3.1.2, load the AggregatePlainTextUmlsProcessor.xml from " CTAKES_HOME/desc/ytex-uima/desc/analysis_engine/ AggregatePlaintextUMLSProcessor.xml" and not from the usual " CTAKES_HOME/desc/ctakes-clinical-pipeline/desc/analysis_engine/ AggregatePlaintextUMLSProcessor.xml" as given here <https://cwiki.apache.org/confluence/display/CTAKES/User%27s+Guide>.
However strangely, "ytex-uima/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml" produced even less annotations than " ctakes-clinical-pipeline/desc/analysis_engine/ AggregatePlaintextUMLSProcessor.xml". I expected ytex-specific AE to produce better results. But clearly that's not the case. On Thu, Jun 12, 2014 at 2:51 AM, Abhishek Raj <[email protected]> wrote: > Hi. Thanks for the reply. > I have a file named LookupDesc_Db.xml which has the line <jdbcImpl > tableName="@[email protected]_snomed_fword_lookup"/> > instead of LookupDesc_SNOMED.*template*.xml. Also, my ytex.properties > file seems fine. I have attached the file for your reference. > And yes, when running the ant setup by following #7 on this > <https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation> link, > it sends the output to "setup.out". The build was successful though. I > didn't see any errors. I am attaching the file for your reference as well. > Please have a look and let me know. >
