Yes, that exactly the problem I’ve been reporting. I think you’ll see that it you still get the non-Medical annotations, like Date, RomanNumeral, et al, but not DiseaseDisorderMention and the other Medical ones, right?
I’m still hoping someone can assist with this. From: Abhishek Raj [mailto:[email protected]] Sent: Wed, 18 Jun, 2014 04:43 To: [email protected] Subject: Re: [External] Re: Cannot load AggregatePlainTextUmlsProcessor.xml Found a fix. Will post it here in case it helps someone. When using ctakes-3.1.2, load the AggregatePlainTextUmlsProcessor.xml from "CTAKES_HOME/desc/ytex-uima/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml" and not from the usual "CTAKES_HOME/desc/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml" as given here<https://cwiki.apache.org/confluence/display/CTAKES/User%27s+Guide>. However strangely, "ytex-uima/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml" produced even less annotations than "ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml". I expected ytex-specific AE to produce better results. But clearly that's not the case. On Thu, Jun 12, 2014 at 2:51 AM, Abhishek Raj <[email protected]<mailto:[email protected]>> wrote: Hi. Thanks for the reply. I have a file named LookupDesc_Db.xml which has the line <jdbcImpl tableName="@[email protected]_snomed_fword_lookup"/> instead of LookupDesc_SNOMED.template.xml. Also, my ytex.properties file seems fine. I have attached the file for your reference. And yes, when running the ant setup by following #7 on this<https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation> link, it sends the output to "setup.out". The build was successful though. I didn't see any errors. I am attaching the file for your reference as well. Please have a look and let me know.
