I don't have that file anywhere either. Where do I get it from? On Fri, Oct 10, 2014 at 3:53 PM, Chen, Pei <[email protected]> wrote:
> I think it’s in ctakes-ytex-res.jar (is that in your classpath)? > This is just a guess… vj may have a better idea if it still doesn’t work > for you. > > From: David Kincaid [mailto:[email protected]] > Sent: Friday, October 10, 2014 4:51 PM > To: [email protected] > Subject: Re: NPE with ytex in ctakes 3.2.0 > > No. I have no file named beanRefContext.xml anywhere on my hard drive. > > > > On Fri, Oct 10, 2014 at 3:45 PM, Chen, Pei <[email protected] > <mailto:[email protected]>> wrote: > I’m not too familiar with the ytex component, > but my guess is that the ytexApplicationContext bean is null? > It seems that it would be expected to be in the > classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml? Do those exists? > > From: David Kincaid [mailto:[email protected]<mailto: > [email protected]>] > Sent: Friday, October 10, 2014 4:23 PM > To: [email protected]<mailto:[email protected]> > Subject: NPE with ytex in ctakes 3.2.0 > > I'm trying to experiment the ytex in 3.2.0. Trying to run > AggregatePlaintextUMLSProcessor with the FilesInDirectoryCollectionReader > and FileWriterCASConsumer. When I try to run it against some text files it > blows up with a null pointer exception during initialization. Here's the > relevant part of the stack trace. Anyone have any ideas what I might have > wrong?: > > Caused by: org.apache.uima.resource.ResourceInitializationException: > Initialization of annotator class > "org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator" failed. > (Descriptor: > file:/home/davek/apps/apache-ctakes-3.2.0/desc/ctakes-ytex-uima/desc/analysis_engine/SegmentRegexAnnotator.xml) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156) > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) > at > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) > at > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) > at > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) > at > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) > at > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) > at > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425) > at > org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1088) > ... 9 more > Caused by: java.lang.NullPointerException > at > org.apache.ctakes.ytex.uima.ApplicationContextHolder.getApplicationContext(ApplicationContextHolder.java:79) > at > org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator.initialize(SegmentRegexAnnotator.java:64) > at > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) > ... 24 more > > >
