Thanks, Vijay. I'm running from the ctakes distro. I'll run through the steps in the link you included.
- Dave On Tue, Oct 14, 2014 at 3:25 AM, vijay garla <[email protected]> wrote: > The error is caused by not finding the required properties files/xml > config files. > There are some issues with the ytex setup scripts for the 3.2 release; I > have fixed that in trunk. I am updating the 3.2 installation guide with > the patched setup scripts. > > It's not clear to me if you're running from a dev environment/eclipse, or > running from the ctakes distro. > If running from a development environment, see > https://svn.apache.org/repos/asf/ctakes/trunk/ctakes-ytex/README > If running from the ctakes distro, make sure you follow the ytex setup: > https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation > > For the dev environment, the xml config file is in the ctakes-ytex-res ( > https://svn.apache.org/repos/asf/ctakes/trunk/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml > ) > For the binary distro, the xml config files are in > lib\ctakes-ytex-res-3.2.0.jar > > > -vj > > > On Fri, Oct 10, 2014 at 10:56 PM, David Kincaid <[email protected]> > wrote: > >> I don't have that file anywhere either. Where do I get it from? >> >> On Fri, Oct 10, 2014 at 3:53 PM, Chen, Pei < >> [email protected]> >> wrote: >> >> > I think it’s in ctakes-ytex-res.jar (is that in your classpath)? >> > This is just a guess… vj may have a better idea if it still doesn’t work >> > for you. >> > >> > From: David Kincaid [mailto:[email protected]] >> > Sent: Friday, October 10, 2014 4:51 PM >> > To: [email protected] >> > Subject: Re: NPE with ytex in ctakes 3.2.0 >> > >> > No. I have no file named beanRefContext.xml anywhere on my hard drive. >> > >> > >> > >> > On Fri, Oct 10, 2014 at 3:45 PM, Chen, Pei < >> [email protected] >> > <mailto:[email protected]>> wrote: >> > I’m not too familiar with the ytex component, >> > but my guess is that the ytexApplicationContext bean is null? >> > It seems that it would be expected to be in the >> > classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml? Do those >> exists? >> > >> > From: David Kincaid [mailto:[email protected]<mailto: >> > [email protected]>] >> > Sent: Friday, October 10, 2014 4:23 PM >> > To: [email protected]<mailto:[email protected]> >> > Subject: NPE with ytex in ctakes 3.2.0 >> > >> > I'm trying to experiment the ytex in 3.2.0. Trying to run >> > AggregatePlaintextUMLSProcessor with the >> FilesInDirectoryCollectionReader >> > and FileWriterCASConsumer. When I try to run it against some text files >> it >> > blows up with a null pointer exception during initialization. Here's the >> > relevant part of the stack trace. Anyone have any ideas what I might >> have >> > wrong?: >> > >> > Caused by: org.apache.uima.resource.ResourceInitializationException: >> > Initialization of annotator class >> > "org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator" failed. >> > (Descriptor: >> > >> file:/home/davek/apps/apache-ctakes-3.2.0/desc/ctakes-ytex-uima/desc/analysis_engine/SegmentRegexAnnotator.xml) >> > at >> > >> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) >> > at >> > >> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156) >> > at >> > >> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) >> > at >> > >> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) >> > at >> > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> > at >> > >> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) >> > at >> > >> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) >> > at >> > >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) >> > at >> > >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) >> > at >> > >> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) >> > at >> > >> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) >> > at >> > >> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) >> > at >> > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >> > at >> > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) >> > at >> > >> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425) >> > at >> > >> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1088) >> > ... 9 more >> > Caused by: java.lang.NullPointerException >> > at >> > >> org.apache.ctakes.ytex.uima.ApplicationContextHolder.getApplicationContext(ApplicationContextHolder.java:79) >> > at >> > >> org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator.initialize(SegmentRegexAnnotator.java:64) >> > at >> > >> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) >> > ... 24 more >> > >> > >> > >> > >
