OK, updated the ytex install page: https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation
On Tue, Oct 14, 2014 at 2:54 PM, vijay garla <[email protected]> wrote: > Hi Dave, > > Let me update the instructions first - I'll tell you when I'm done. > > -vj > > On Tue, Oct 14, 2014 at 2:46 PM, David Kincaid <[email protected]> > wrote: > >> Thanks, Vijay. I'm running from the ctakes distro. I'll run through the >> steps in the link you included. >> >> - Dave >> >> On Tue, Oct 14, 2014 at 3:25 AM, vijay garla <[email protected]> wrote: >> >>> The error is caused by not finding the required properties files/xml >>> config files. >>> There are some issues with the ytex setup scripts for the 3.2 release; I >>> have fixed that in trunk. I am updating the 3.2 installation guide with >>> the patched setup scripts. >>> >>> It's not clear to me if you're running from a dev environment/eclipse, >>> or running from the ctakes distro. >>> If running from a development environment, see >>> https://svn.apache.org/repos/asf/ctakes/trunk/ctakes-ytex/README >>> If running from the ctakes distro, make sure you follow the ytex setup: >>> https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation >>> >>> For the dev environment, the xml config file is in the ctakes-ytex-res ( >>> https://svn.apache.org/repos/asf/ctakes/trunk/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml >>> ) >>> For the binary distro, the xml config files are in >>> lib\ctakes-ytex-res-3.2.0.jar >>> >>> >>> -vj >>> >>> >>> On Fri, Oct 10, 2014 at 10:56 PM, David Kincaid <[email protected]> >>> wrote: >>> >>>> I don't have that file anywhere either. Where do I get it from? >>>> >>>> On Fri, Oct 10, 2014 at 3:53 PM, Chen, Pei < >>>> [email protected]> >>>> wrote: >>>> >>>> > I think it’s in ctakes-ytex-res.jar (is that in your classpath)? >>>> > This is just a guess… vj may have a better idea if it still doesn’t >>>> work >>>> > for you. >>>> > >>>> > From: David Kincaid [mailto:[email protected]] >>>> > Sent: Friday, October 10, 2014 4:51 PM >>>> > To: [email protected] >>>> > Subject: Re: NPE with ytex in ctakes 3.2.0 >>>> > >>>> > No. I have no file named beanRefContext.xml anywhere on my hard drive. >>>> > >>>> > >>>> > >>>> > On Fri, Oct 10, 2014 at 3:45 PM, Chen, Pei < >>>> [email protected] >>>> > <mailto:[email protected]>> wrote: >>>> > I’m not too familiar with the ytex component, >>>> > but my guess is that the ytexApplicationContext bean is null? >>>> > It seems that it would be expected to be in the >>>> > classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml? Do those >>>> exists? >>>> > >>>> > From: David Kincaid [mailto:[email protected]<mailto: >>>> > [email protected]>] >>>> > Sent: Friday, October 10, 2014 4:23 PM >>>> > To: [email protected]<mailto:[email protected]> >>>> > Subject: NPE with ytex in ctakes 3.2.0 >>>> > >>>> > I'm trying to experiment the ytex in 3.2.0. Trying to run >>>> > AggregatePlaintextUMLSProcessor with the >>>> FilesInDirectoryCollectionReader >>>> > and FileWriterCASConsumer. When I try to run it against some text >>>> files it >>>> > blows up with a null pointer exception during initialization. Here's >>>> the >>>> > relevant part of the stack trace. Anyone have any ideas what I might >>>> have >>>> > wrong?: >>>> > >>>> > Caused by: org.apache.uima.resource.ResourceInitializationException: >>>> > Initialization of annotator class >>>> > "org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator" failed. >>>> > (Descriptor: >>>> > >>>> file:/home/davek/apps/apache-ctakes-3.2.0/desc/ctakes-ytex-uima/desc/analysis_engine/SegmentRegexAnnotator.xml) >>>> > at >>>> > >>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252) >>>> > at >>>> > >>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156) >>>> > at >>>> > >>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) >>>> > at >>>> > >>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) >>>> > at >>>> > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >>>> > at >>>> > >>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387) >>>> > at >>>> > >>>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254) >>>> > at >>>> > >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431) >>>> > at >>>> > >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375) >>>> > at >>>> > >>>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185) >>>> > at >>>> > >>>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94) >>>> > at >>>> > >>>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62) >>>> > at >>>> > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269) >>>> > at >>>> > org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314) >>>> > at >>>> > >>>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425) >>>> > at >>>> > >>>> org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1088) >>>> > ... 9 more >>>> > Caused by: java.lang.NullPointerException >>>> > at >>>> > >>>> org.apache.ctakes.ytex.uima.ApplicationContextHolder.getApplicationContext(ApplicationContextHolder.java:79) >>>> > at >>>> > >>>> org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator.initialize(SegmentRegexAnnotator.java:64) >>>> > at >>>> > >>>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250) >>>> > ... 24 more >>>> > >>>> > >>>> > >>>> >>> >>> >> >
