Hi Supun, Shameera, We can reproduce this issue the following way:
Install a PGA and Airavata locally, upload a file and have Airavata stage it to XSEDE resource. When the hostname name is localhost, something is not picking up the file path. Can we try and reproduce it on one of the VM? Hi Bhanu, Is it possible to save the Amazon VM with all the installation you have and share it with us? We can then deploy that on EC2 instance and see if we can get it working. Suresh > On Aug 25, 2015, at 11:19 AM, Bhanu Rekepalli <[email protected]> wrote: > > Hi: > I am hosting PGA on EC2 instance and I currently cannot move data from EC2 to > Stampede. > On the contrary I can get data files from Stampede to EC2 instance. > > Following is the error I am getting. > org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input > File Staging at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) > at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) > at > org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) Caused by: > org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input > File Staging at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) > ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: > Failed during scping local > file://[email protected]:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta > > <file:///[email protected]:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta> > to remote file stampede.tacc.xsede.org:rFile : > /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta > at > org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) > at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) > ... 9 more Caused by: java.io.FileNotFoundException: /[email protected] > <mailto:[email protected]>:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta > (No such file or directory) at java.io.FileInputStream.open0(Native Method) > at java.io.FileInputStream.open(FileInputStream.java:195) at > java.io.FileInputStream.(FileInputStream.java:138) at > java.io.FileInputStream.(FileInputStream.java:93) at > org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at > org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) > ... 10 more org.apache.airavata.gfac.GFacException: Error Invoking > Handlers:Error Executing a InFlow Handler > org.apache.airavata.gfac.GFacException: Error launching the Job at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:505) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) > at > org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) Caused by: > org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error > Executing a InFlow Handler at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:743) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) > ... 5 more Caused by: org.apache.airavata.gfac.GFacException: Error Invoking > Handlers:Error Executing a InFlow Handler at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:910) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) > ... 6 more Caused by: org.apache.airavata.gfac.GFacException: Error > Executing a InFlow Handler at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:899) > ... 7 more Caused by: > org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input > File Staging at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) > at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) > ... 7 more Caused by: > org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input > File Staging at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) > ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: > Failed during scping local > file://[email protected]:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta > > <file:///[email protected]:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta> > to remote file stampede.tacc.xsede.org:rFile : > /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta > at > org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) > at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) > ... 9 more Caused by: java.io.FileNotFoundException: /[email protected] > <mailto:[email protected]>:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta > (No such file or directory) at java.io.FileInputStream.open0(Native Method) > at java.io.FileInputStream.open(FileInputStream.java:195) at > java.io.FileInputStream.(FileInputStream.java:138) at > java.io.FileInputStream.(FileInputStream.java:93) at > org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at > org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) > ... 10 more
