Hi Suresh, Caught up in meetings and demo till now. Do you want both AA and PGA folders? Bhanu
On Tue, Aug 25, 2015 at 12:34 PM, Suresh Marru <[email protected]> wrote: > Yes we tried that and it works ok. I think this has a small issue > somewhere in parsing the URL’s and handshake between PGA and Airavata on > setting these file paths. > > Suresh > > On Aug 25, 2015, at 12:26 PM, Pierce, Marlon <[email protected]> wrote: > > Is there a way to check SCP on the command line? > > From: Suresh Marru <[email protected]> > Reply-To: Airavata Users <[email protected]> > Date: Tuesday, August 25, 2015 at 11:49 AM > To: Airavata Users <[email protected]> > Subject: Re: Issues moving data from my PGA server to stampede > > Hi Supun, Shameera, > > We can reproduce this issue the following way: > > Install a PGA and Airavata locally, upload a file and have Airavata stage > it to XSEDE resource. When the hostname name is localhost, something is not > picking up the file path. Can we try and reproduce it on one of the VM? > > Hi Bhanu, > > Is it possible to save the Amazon VM with all the installation you have > and share it with us? We can then deploy that on EC2 instance and see if we > can get it working. > > Suresh > > > On Aug 25, 2015, at 11:19 AM, Bhanu Rekepalli <[email protected]> wrote: > > Hi: > I am hosting PGA on EC2 instance and I currently cannot move data from EC2 > to Stampede. > On the contrary I can get data files from Stampede to EC2 instance. > > Following is the error I am getting. > org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while > input File Staging at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) > at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) > at > org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) Caused by: > org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while > input File Staging at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) > ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: > Failed during scping local > file://[email protected]:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta > to remote file stampede.tacc.xsede.org:rFile : > /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta > at > org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) > at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) > ... 9 more Caused by: java.io.FileNotFoundException: > /[email protected]:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta > (No such file or directory) at java.io.FileInputStream.open0(Native Method) > at java.io.FileInputStream.open(FileInputStream.java:195) at > java.io.FileInputStream.(FileInputStream.java:138) at > java.io.FileInputStream.(FileInputStream.java:93) at > org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at > org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) > ... 10 more org.apache.airavata.gfac.GFacException: Error Invoking > Handlers:Error Executing a InFlow Handler > org.apache.airavata.gfac.GFacException: Error launching the Job at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:505) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) > at > org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > at java.lang.Thread.run(Thread.java:745) Caused by: > org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error > Executing a InFlow Handler at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:743) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) > ... 5 more Caused by: org.apache.airavata.gfac.GFacException: Error > Invoking Handlers:Error Executing a InFlow Handler at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:910) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) > ... 6 more Caused by: org.apache.airavata.gfac.GFacException: Error > Executing a InFlow Handler at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:899) > ... 7 more Caused by: > org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while > input File Staging at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) > at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) > at > org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) > ... 7 more Caused by: > org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while > input File Staging at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) > ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: > Failed during scping local > file://[email protected]:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta > to remote file stampede.tacc.xsede.org:rFile : > /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta > at > org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) > at > org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) > ... 9 more Caused by: java.io.FileNotFoundException: > /[email protected]:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta > (No such file or directory) at java.io.FileInputStream.open0(Native Method) > at java.io.FileInputStream.open(FileInputStream.java:195) at > java.io.FileInputStream.(FileInputStream.java:138) at > java.io.FileInputStream.(FileInputStream.java:93) at > org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at > org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) > ... 10 more > > > > -- Bhanu Rekepalli, PhD Sr. Scientific Consultant & Principal Investigator BioTeam <http://bioteam.net/>: Enabling Science 7 Derosier Drive, Middleton, MA 01949 Off. Phones: 800-293-7090, 865-240-2910 Cell: 865-230-1605
