Hi Heejoon, are you getting this continuously?, I had a quick look at the exception lines and I couldn't think a scenario where this kind of exceptions can occur from gfac side? I didn't go through registry side let me have a look there too.
Thanks, Shameera. On Sat, Oct 31, 2015 at 2:39 AM Heejoon Chae <[email protected]> wrote: > That process also gives creating job descriptor error as following, > > [ERROR] expId: testtest12_37cc9f7b-d3e4-48cc-aa5a-032401485cd9, processId: > PROCESS_52bb3e9f-1cdf-405e-bf2b-dce00369f478, taskId: > TASK_0762e150-08e0-4576-819f-85a95e3a5a4a type: JOB_SUBMISSION,:- Job > submission task failed, reason: Error occurred while creating job descriptor > > I put 'sbatch' for SUBMISSON, 'squeue' for JOB_MONITORING, and scancel for > 'DELETION' at Job Submission Interfaces section > > Thank you, > Heejoon. > > On Fri, Oct 30, 2015 at 9:53 AM, Heejoon Chae <[email protected]> > wrote: > >> Hi, >> >> I have succeeded to submit test 'echo' job through PGA's Slurm sbatch >> interface running both on locally installed PGA and Airavata server. >> >> Now I can see that the job is correctly queued and the echo script >> successfully generates result. >> >> However, on the Airavata server side, I got several errors related with >> 'Data type '<UNKNOWN>' is not supported' and eventually got '[ERROR] Error >> while getting experiment info' >> >> Following is part of errors related with the data type ''<UNKNOWN>'. >> >> >> **************************************************************************************************** >> [ERROR] Error occurred while creating job descriptor >> org.apache.airavata.gfac.core.GFacException: Error persisting job >> statusError while adding JOB_STATUS >> at >> org.apache.airavata.gfac.core.GFacUtils.saveJobStatus(GFacUtils.java:262) >> at >> org.apache.airavata.gfac.impl.task.SSHJobSubmissionTask.execute(SSHJobSubmissionTask.java:91) >> at >> org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:522) >> at >> org.apache.airavata.gfac.impl.GFacEngineImpl.executeJobSubmission(GFacEngineImpl.java:207) >> at >> org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:180) >> at >> org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:188) >> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:95) >> at >> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) >> at >> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) >> at java.lang.Thread.run(Thread.java:745) >> Caused by: org.apache.airavata.registry.cpi.RegistryException: Error >> while adding JOB_STATUS >> at >> org.apache.airavata.registry.core.experiment.catalog.impl.ExperimentCatalogImpl.add(ExperimentCatalogImpl.java:189) >> at >> org.apache.airavata.gfac.core.GFacUtils.saveJobStatus(GFacUtils.java:251) >> ... 9 more >> Caused by: org.apache.airavata.registry.cpi.RegistryException: >> org.apache.airavata.registry.cpi.RegistryException: >> <openjpa-2.2.0-r422266:1244990 fatal general error> >> org.apache.openjpa.persistence.PersistenceException: dataType '<UNKNOWN>' >> is not supported. >> at >> org.apache.airavata.registry.core.experiment.catalog.impl.ExperimentRegistry.addJobStatus(ExperimentRegistry.java:557) >> at >> org.apache.airavata.registry.core.experiment.catalog.impl.ExperimentCatalogImpl.add(ExperimentCatalogImpl.java:182) >> ... 10 more >> >> ******************************************************************************************************** >> >> Any suggestions? >> >> Thank you, >> Heejoon. >> > > -- Shameera Rathnayaka
