I am using recent 0.16. Thank you, Heejoon.
On Mon, Nov 2, 2015 at 9:27 AM, Chathuri Wimalasena <[email protected]> wrote: > Hi Heejoon, > > Are you using 0.16 master or 0.15 branch ? > > Thanks.. > Chathuri > > On Sun, Nov 1, 2015 at 5:57 PM, Shameera Rathnayaka < > [email protected]> wrote: > >> Hi Heejoon, >> >> are you getting this continuously?, I had a quick look at the exception >> lines and I couldn't think a scenario where this kind of exceptions can >> occur from gfac side? I didn't go through registry side let me have a look >> there too. >> >> Thanks, >> Shameera. >> >> >> On Sat, Oct 31, 2015 at 2:39 AM Heejoon Chae <[email protected]> >> wrote: >> >>> That process also gives creating job descriptor error as following, >>> >>> [ERROR] expId: testtest12_37cc9f7b-d3e4-48cc-aa5a-032401485cd9, >>> processId: PROCESS_52bb3e9f-1cdf-405e-bf2b-dce00369f478, taskId: >>> TASK_0762e150-08e0-4576-819f-85a95e3a5a4a type: JOB_SUBMISSION,:- Job >>> submission task failed, reason: Error occurred while creating job descriptor >>> >>> I put 'sbatch' for SUBMISSON, 'squeue' for JOB_MONITORING, and scancel >>> for 'DELETION' at Job Submission Interfaces section >>> >>> Thank you, >>> Heejoon. >>> >>> On Fri, Oct 30, 2015 at 9:53 AM, Heejoon Chae <[email protected]> >>> wrote: >>> >>>> Hi, >>>> >>>> I have succeeded to submit test 'echo' job through PGA's Slurm sbatch >>>> interface running both on locally installed PGA and Airavata server. >>>> >>>> Now I can see that the job is correctly queued and the echo script >>>> successfully generates result. >>>> >>>> However, on the Airavata server side, I got several errors related with >>>> 'Data type '<UNKNOWN>' is not supported' and eventually got '[ERROR] Error >>>> while getting experiment info' >>>> >>>> Following is part of errors related with the data type ''<UNKNOWN>'. >>>> >>>> >>>> **************************************************************************************************** >>>> [ERROR] Error occurred while creating job descriptor >>>> org.apache.airavata.gfac.core.GFacException: Error persisting job >>>> statusError while adding JOB_STATUS >>>> at >>>> org.apache.airavata.gfac.core.GFacUtils.saveJobStatus(GFacUtils.java:262) >>>> at >>>> org.apache.airavata.gfac.impl.task.SSHJobSubmissionTask.execute(SSHJobSubmissionTask.java:91) >>>> at >>>> org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:522) >>>> at >>>> org.apache.airavata.gfac.impl.GFacEngineImpl.executeJobSubmission(GFacEngineImpl.java:207) >>>> at >>>> org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:180) >>>> at >>>> org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:188) >>>> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:95) >>>> at >>>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) >>>> at >>>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) >>>> at java.lang.Thread.run(Thread.java:745) >>>> Caused by: org.apache.airavata.registry.cpi.RegistryException: Error >>>> while adding JOB_STATUS >>>> at >>>> org.apache.airavata.registry.core.experiment.catalog.impl.ExperimentCatalogImpl.add(ExperimentCatalogImpl.java:189) >>>> at >>>> org.apache.airavata.gfac.core.GFacUtils.saveJobStatus(GFacUtils.java:251) >>>> ... 9 more >>>> Caused by: org.apache.airavata.registry.cpi.RegistryException: >>>> org.apache.airavata.registry.cpi.RegistryException: >>>> <openjpa-2.2.0-r422266:1244990 fatal general error> >>>> org.apache.openjpa.persistence.PersistenceException: dataType '<UNKNOWN>' >>>> is not supported. >>>> at >>>> org.apache.airavata.registry.core.experiment.catalog.impl.ExperimentRegistry.addJobStatus(ExperimentRegistry.java:557) >>>> at >>>> org.apache.airavata.registry.core.experiment.catalog.impl.ExperimentCatalogImpl.add(ExperimentCatalogImpl.java:182) >>>> ... 10 more >>>> >>>> ******************************************************************************************************** >>>> >>>> Any suggestions? >>>> >>>> Thank you, >>>> Heejoon. >>>> >>> >>> -- >> Shameera Rathnayaka >> > >
