Hi! On 28 January 2011 10:05, Greenman, Ronald (NIH/CIT) [C] <[email protected]<mailto:[email protected]>> wrote: > I'm running a locally installed PRIDE/BioMart combination, using the > configuration offered by PRIDE at > <http://sourceforge.net/projects/pride-proteome/files/>. The files on SourceForge seem to be outdated by a couple of years now. You can access a current version of the PRIDE BioMart via http://www.ebi.ac.uk/pride/prideMart.do
Whilst you can run your own BioMart locally, I suggest that you also have a look at querying the PRIDE BioMart at EBI. You can submit queries manually via the web-interface or you can submit queries programmatically via the XML/RESTful-interface or via the Perl API. Hope that helps. Joachim
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